@article {pmid40646028,
year = {2025},
author = {Basso, B and Tadiello, T and Millar, N and Robertson, GP and Paustian, K and Maureira, FS and Albarenque, S and Baer, B and Price, L and Sharma, P and Villalobos, C and Fowler, A and Delandmeter, M and Acutis, M and Archontoulis, S and Covey, KR and Doro, L and Dumont, B and Grace, PR and Hoogenboom, G and Jones, JW and Perego, A and Ruane, A and Stöckle, CO and Zhang, Y},
title = {A multi model ensemble reveals net climate benefits from regenerative practices in US Midwest croplands.},
journal = {Scientific reports},
volume = {15},
number = {1},
pages = {24881},
pmid = {40646028},
issn = {2045-2322},
support = {DE-SC0018409//Great Lakes Bioenergy Research Center, U.S. Department of Energy, Office of Science, Biological and Environmental Research Program/ ; DE-SC0018409//Great Lakes Bioenergy Research Center, U.S. Department of Energy, Office of Science, Biological and Environmental Research Program/ ; DE-SC0018409//Great Lakes Bioenergy Research Center, U.S. Department of Energy, Office of Science, Biological and Environmental Research Program/ ; DE-SC0018409//Great Lakes Bioenergy Research Center, U.S. Department of Energy, Office of Science, Biological and Environmental Research Program/ ; DEB 2224712//National Science Foundation Long-term Ecological Research Program (DEB 2224712) at the Kellogg Biological Statio/ ; DEB 2224712//National Science Foundation Long-term Ecological Research Program (DEB 2224712) at the Kellogg Biological Statio/ ; 2020-67021-32799//USDA NIFA/ ; 2020-67021-32799//USDA NIFA/ ; 44221//Fonds De La Recherche Scientifique - FNRS/ ; 44221//Fonds De La Recherche Scientifique - FNRS/ ; },
abstract = {Process-based cropping systems models (CSMs) are key components of measurement, monitoring, reporting, and verification frameworks of carbon markets, but model-specific differences limit their applicability across diverse pedo-climatic conditions and agronomic practices. Multi-model ensemble (MME) provides an opportunity to better estimate changes in soil organic carbon (SOC) and nitrous oxide (N2O) emissions from agronomic practices at scale. We used an MME across 46 million hectares of US Midwest cropland at a resolution of 4-km[2] to assess the aggregate ability of different regenerative practices to sequester SOC and N2O emissions compared to their counterfactual dynamic baselines. MME was validated against long-term trials and compared to its constituent CSMs, showing greater accuracy and lower uncertainty. The results show that adopting no-till combined with cover crops increased SOC stocks by 0.36 ± 0.12 Mg ha[-1] yr[-1], corresponding to a net regional SOC gain of 16.4 Tg C yr[-1] compared to business-as-usual baselines. These benefits are halved when each management is practiced individually, and the SOC gains are only fully realized with low initial carbon stock. By including N2O emissions, we can assess the overall climate mitigation potential, specifically, the extent to which carbon sequestration can offset direct N2O emissions. The magnitude of this potential varies depending on management practices and geographic location with net climate benefits on average ranging from 0 to 3 Mg CO2-eq ha[-1] yr[-1]. High-resolution MME results allow for robust estimates of climate mitigation, reducing barriers to carbon market participation and supporting regenerative agriculture initiatives at scale.},
}

@article {pmid40492775,
year = {2025},
author = {Jones, EL and Menden-Deuer, S and Rynearson, TA},
title = {Dinoflagellate and ciliate trophic modes database.},
journal = {Microbiology resource announcements},
volume = {14},
number = {7},
pages = {e0015425},
pmid = {40492775},
issn = {2576-098X},
support = {80NSSC17K0716/NASA/NASA/United States ; 2322676//National Science Foundation NES-LTER/ ; },
abstract = {This database synthesizes trophic information on dinoflagellate and ciliate taxa, emphasizing their crucial roles in marine food webs. The compiled database serves as a valuable resource for understanding the ecological importance of these protists across the global ocean.},
}

@article {pmid40546057,
year = {2025},
author = {Dobson, KC and Zarnetske, PL},
title = {A Global Meta-Analysis of Passive Experimental Warming Effects on Plant Traits and Community Properties.},
journal = {Global change biology},
volume = {31},
number = {6},
pages = {e70306},
doi = {10.1111/gcb.70306},
pmid = {40546057},
issn = {1365-2486},
support = {1828149//NSF Research Traineeship Program DGE/ ; 2224712//NSF-LTER at Kellogg Biological Station/ ; //Michigan State College of Natural Science/ ; },
abstract = {In order to better predict climate change effects on plants and their communities, we need to improve our understanding of how various plant traits and community properties respond to warming, as well as what contexts contribute to variation in these responses. To address this knowledge gap, we compiled data from 126 in situ passive experimental warming studies on 13 different plant trait and community property responses. We then collected metadata from these studies to define 9 different study contexts spanning environmental, experimental, and plant-level scales. We find that, globally, some traits decrease when warmed (e.g., aboveground N content), while others increase (e.g., plant biomass). We also identify contexts that contribute to variation in plant responses to warming, such as latitude, distance from northern range edge, and plant functional group, but the importance of these contexts varies based on the trait or community property measured. For example, as latitude increases, the effect of warming on reproductive traits becomes stronger, but this latitude-trait relationship did not hold for all traits. Our study highlights how multiple plant traits and community properties respond to warming across the globe, the importance of carefully designing and interpreting the outcomes of climate change experiments, and the need for coordinated warming experiments across varying environmental contexts in order to mechanistically understand and predict plant community responses to climate warming.},
}

@article {pmid40545850,
year = {2025},
author = {Kale, V and Bartel, J and Bartosik, D and Lude, PB and Sidhu, C and Teeling, H and Amann, R and Schweder, T and Becher, D and Trautwein-Schult, A},
title = {Metaproteomic Dataset on Semi-Diurnal Variability of the Bacterioplankton Communities During a Spring Phytoplankton Bloom in the North Sea.},
journal = {Proteomics},
volume = {},
number = {},
pages = {e70001},
doi = {10.1002/pmic.70001},
pmid = {40545850},
issn = {1615-9861},
support = {//Max Planck Society/ ; //German Research Foundation/ ; AM 73/9-3//Deutsche Forschungsgemeinschaft/ ; SCHW 595/11-3//Deutsche Forschungsgemeinschaft/ ; TE 813/2-3//Deutsche Forschungsgemeinschaft/ ; BE3869/4-3//Deutsche Forschungsgemeinschaft/ ; },
abstract = {Phytoplankton blooms create a substrate-rich environment that supports the growth of bacterial planktonic heterotrophs. Previously, we studied the dynamics of such bacterioplankton at a long-term ecological research site near the coast of Helgoland Island (North Sea) once a day. Here, we present a novel dataset (available under the PRIDE-ID: PXD055396) indicating significant differences at the protein level in a semi-diurnal analysis. Using metaproteomics, we studied changes in the free-living (0.2-3 µm) bacterial community that occurred between early (7 am) and late (9 pm) sampling over 3 days. The results highlight the sensitivity, robustness, and reproducibility of mass spectrometry-based metaproteomic analyses to assess changes in the activities of the bacterioplankton communities. Taxonomic analyses revealed significant changes in the abundance of 65 bacterial genera. Particularly, proteins from the flavobacterial genera Candidatus Prosiliicoccus and Aurantivirga were significantly more abundant in the late samples. This comprehensive dataset highlights semi-diurnal changes in bacterial community composition and metabolic activity during a phytoplankton bloom that would have remained undetected with a once-per-day sampling approach.},
}

@article {pmid40537598,
year = {2025},
author = {Condon, KV and Carroll, CJW and Griffin-Nolan, RJ and Slette, IJ and Wilkins, KD and Smith, MD and Knapp, AK},
title = {Experimental drought consistently underestimates productivity responses to natural drought in four Central US grasslands.},
journal = {Oecologia},
volume = {207},
number = {7},
pages = {104},
pmid = {40537598},
issn = {1432-1939},
support = {EF-1137342//National Science Foundation Macrosystems Biology and Emerging Frontiers Programs/ ; EF-1137378//National Science Foundation Macrosystems Biology and Emerging Frontiers Programs/ ; EF-1137363//National Science Foundation Macrosystems Biology and Emerging Frontiers Programs/ ; 2018-67019-27849//National Institute of Food and Agriculture/ ; 2020-67019-31795//National Institute of Food and Agriculture/ ; 2022-67019-36367//National Institute of Food and Agriculture/ ; DEB-2025849//Konza Prairie Long Term Ecological Research Program/ ; },
abstract = {Climate change is increasing the frequency and severity of droughts globally, and grasslands are particularly vulnerable to such hydrological extremes. Drought effects at the ecosystem scale have been assessed both experimentally and through the study of naturally occurring drought, with emerging evidence that the magnitude of drought effects may vary depending on the approach used. We took advantage of a decadal study of four grasslands to directly contrast responses of aboveground net primary productivity (ANPP) to simulated vs. natural drought. The grasslands spanned a ~ threefold mean annual precipitation gradient (335-857 mm) and were all subjected to a natural 1-year drought (~ 40% reduction in precipitation from the long-term mean) and a 4 year experimental drought (~ 50% precipitation reduction). We expected that the 4 year drought would reduce ANPP more, and that post-drought recovery would be delayed, compared to the 1-year drought. We found instead that the short-term natural drought reduced ANPP more strongly than the simulated drought in all grasslands (~ 10 to ~ 50%) likely due to the co-occurrence of higher temperatures and vapor pressure deficits with reduced precipitation. Post-drought recovery was site specific and each site differed in their recovery from the natural and experimental droughts. These results align with past analyses that experiments that only manipulate soil moisture likely underestimate the magnitude of natural drought events. However, experiments can provide valuable insight into the relative sensitivity of ecosystems to reduced precipitation and soil moisture, a key aspect of drought.},
}

@article {pmid40455245,
year = {2025},
author = {Turnley, BD and Kazenel, MR and Wright, KW and Griswold, TL and Rudgers, JA and Whitney, KD},
title = {Traits and functional diversity of a bee assemblage are linked to aridity.},
journal = {Oecologia},
volume = {207},
number = {6},
pages = {96},
pmid = {40455245},
issn = {1432-1939},
support = {NSF DEB 1655499//Sevilleta Long Term Ecological Research and the University of New Mexico Department of Biology Program/ ; },
mesh = {Animals ; Bees/physiology ; *Climate Change ; *Biodiversity ; },
abstract = {Climate change in the American Southwest is reshaping species assemblages. However, the resulting patterns in mean trait values and functional diversity are poorly understood. Bee assemblages in Southwestern drylands are exceptionally diverse, with species varying greatly in their morphological traits. In this study, we addressed two questions: Do climate variables associated with aridity predict community-weighted mean trait values? Has bee assemblage functional diversity declined under increasing aridity? To answer these questions, we utilized 16 years of abundance data for 33 focal bee species within a hyperdiverse bee assemblage at the Sevilleta National Wildlife Refuge (NM, USA), combined with measurements of a suite of five morphological traits hypothesized to mediate climate change responses: body size, wing size, lightness, face hairiness, and thorax hairiness. Our models reveal that community-level responses to climate are trait-specific and vary seasonally: aridity is more predictive in the spring, while temperature and precipitation are more predictive of trait shifts during the monsoon season. With less precipitation, higher temperatures, and increased aridity, bee species that have large bodies, large wings, are lightly colored, and are hairy appear favored. The functional richness of the Sevilleta bee assemblage increased with aridity in the spring and decreased with precipitation in the monsoon season. Functional evenness and functional divergence did not co-vary with any climate variable. We conclude that characteristics of bee assemblages such as community average trait values and functional diversity may change predictably with the increased aridity forecast for this region in the future.},
}

Animals
Bees/physiology
*Climate Change
*Biodiversity

@article {pmid40447905,
year = {2025},
author = {Battisti, C and Gallitelli, L},
title = {Entrapped vertebrates in discarded bottles in a small Mediterranean island: low density suggests an 'insular effect'.},
journal = {Environmental science and pollution research international},
volume = {},
number = {},
pages = {},
pmid = {40447905},
issn = {1614-7499},
abstract = {Among macro-litter, glass bottles are one of the most important categories of litter discarded in the terrestrial environments. Discarded glass bottles pose multiple ecological risks, including habitat disruption and entrapment of biota (invertebrates and small vertebrates) therefore acting as ecological traps. Particularly, the entrapment of biota in bottles has been investigated in the mainland and on islands. On this latter, the presence of these anthropogenic traps can lead to strong impacts on the populations of some species. Being islands an important site of occurrence of species of biogeographic interest, here, we aimed to investigate the entrapment of small vertebrates by discarded glass bottles recorded in a small Mediterranean island (circum-Sardinia). We collected glass bottles on 15 transects and calculated a density index (Abundance Kilometric Index; AKI, in bottle/km). On 38,810 m sampled, 86 glass bottles were collected (AKI = 2.22): 15 bottles along paved roads (AKI = 1.57) and 71 along pedestrian paths (29,230 m; AKI = 2.43). Differences between frequencies of bottles with organisms between paved roads and terrestrial paths were not significant either on the total of bottles and for large and small ones. In bottles, we recorded both invertebrates (terrestrial Gastropoda mollusks and Insecta Coleoptera indet.) and remnants of small vertebrates (one Mus musculus, one Chalcides ocellatus). Our study found a low density of discarded glass bottles (< 3/km) when compared to an analogous research carried out in neighbouring Sardinia. This low density suggests an 'insular effect' acting on animals entrapped by debris, i.e. a reducted rate of entrapment of bottles on small vertebrates. This effect may be driven by both low human presence and low species richness, which limits the risk of small vertebrates being trapped in bottles.},
}

@article {pmid40424916,
year = {2025},
author = {Richey, A and Oberbauer, SF and Castañeda-Moya, E and Troxler, T and Kominoski, JS and Olivas, P and Malone, SL},
title = {Sea-level rise and freshwater management are reshaping coastal landscapes.},
journal = {Journal of environmental management},
volume = {387},
number = {},
pages = {125842},
doi = {10.1016/j.jenvman.2025.125842},
pmid = {40424916},
issn = {1095-8630},
abstract = {Along low-elevation coastlines, sea-level rise (SLR) threatens to salinate ecosystems. To understand the effects of SLR and freshwater management on landscape carbon (C) exchange, we measured the net ecosystem exchange (NEE) of CO2 between subtropical wetland ecosystems and the atmosphere along a dynamic salinity gradient. Ecosystems were representative of freshwater marl prairies, brackish ecotones, and saline scrub mangrove forests in the southeastern Everglades. Patterns in NEE explained the landward movement of coastal wetlands, a process observed over the last 70 years. The capacity to capture C was greatest along the coast in the scrub mangrove (-294 ± 0.02 g C m[-2] y[-1]) and declined inland into marl prairies (-47 ± 0.03 g C m[-2] y[-1]). Low resilience to current conditions was evident in marl prairies, a result of the legacy impacts of water diversion throughout the greater Everglades. Although the southeastern Everglades captured approximately 115 metric tons of C in 2021, if the ecotone continues to advance at 25 m y[-1] over the next century, we project a 12 % increase (16 mt C y[-1]) in net CO2 capture. Results emphasize that initial functional responses to changes in conditions may not accurately represent long-term outcomes and highlight the role of brackish ecotone communities as the frontline for climate- and management-induced shifts in coastal ecosystem structure and function. This is the first study to use disequilibrium dynamics to understand landscape-level transitions and their implications for C capture.},
}

@article {pmid40410399,
year = {2025},
author = {Pintar, MR and Dorn, NJ},
title = {Invasive swamp eels reduce aquatic animal diversity and disproportionately reduce prey for nesting wading birds.},
journal = {Scientific reports},
volume = {15},
number = {1},
pages = {17975},
pmid = {40410399},
issn = {2045-2322},
support = {4500135928//South Florida Water Management District/ ; 4500135928//South Florida Water Management District/ ; },
mesh = {Animals ; *Birds/physiology ; *Predatory Behavior ; *Biodiversity ; *Introduced Species ; Ecosystem ; Florida ; Biomass ; *Smegmamorpha/physiology ; Nesting Behavior ; Wetlands ; Conservation of Natural Resources ; },
abstract = {Ecosystem restoration often aims to create environmental conditions that support communities of native organisms resembling those prior to alteration by humans. One focus of the multi-decade multi-billion-dollar Florida Everglades restoration effort is to recreate hydrologic conditions in Everglades National Park and associated pulses of aquatic animal prey to support the large colonies of seasonally nesting wading birds that are iconic predators in the ecosystem. Recent studies indicate that invasion of predatory Asian Swamp Eels (Monopterus albus/javanensis) has disrupted the hydrology-mediated production of crayfish and some small fishes in the drainage of first invasion (circa 2012). Here we used a complete community dataset of fish and decapods to report changes to the aquatic community diversity, composition, and biomass of prey produced for wading birds. After the establishment of swamp eels in Taylor Slough (Everglades National Park) average fish and decapod richness declined by 25% and communities shifted to a new state dominated by grass shrimp and a few species of small fishes. Swamp eels differentially reduced the production of primary wading bird resources; while there has been a 68% decline in total small fish and decapod biomass, the biomass of the most important prey species for nesting wading birds declined 80%. If similar impacts follow the spread of swamp eels into other major drainages of the Everglades, the invasion may precipitate an ecosystem collapse-fundamentally simplifying and restructuring the aquatic communities of this vast wetland ecosystem and limiting the trophic support for wading bird breeding aggregations that are important indicators for ecological restoration.},
}

Animals
*Birds/physiology
*Predatory Behavior
*Biodiversity
*Introduced Species
Ecosystem
Florida
Biomass
*Smegmamorpha/physiology
Nesting Behavior
Wetlands
Conservation of Natural Resources

@article {pmid40393995,
year = {2025},
author = {Tiefenbacher, A and Schaumberger, A and Kaul, HP and Zillner, E and Hans, A and Surböck, A and Gollner, G and Friedel, J and Euteneuer, P and Asanza-Grabenbauer, M and Egger, C and Gaube, V and Peterseil, J and Sandén, T and Strobl, T and Spiegel, H},
title = {Data on yield and soil parameters of three diverse tilled long-term experimental sites in Austria (2018-2022).},
journal = {Scientific data},
volume = {12},
number = {1},
pages = {821},
pmid = {40393995},
issn = {2052-4463},
abstract = {The agroecological "Marchfeld" cluster assessed the impact of tillage on primary production (yield) and selected soil parameters at three sites (two conventionally and one organically managed) from 2018-2022. The data were uniformly compiled in a data set. The examined factors were no, minimum (5-8 cm), reduced (10-15 cm) and conventional (25-30 cm) tillage. All measured parameters were documented in a state-of-the-art quality control approach and stored in the data set. The long-term experimental (LTER) sites have been operating for a long time (from 6-34 years), so that our parameters show accumulated historical developments that influence the present. The data is available for (re)use by others (scientists, stakeholders, etc.) on Zenodo for meta-analyses, process modelling and other environmental studies.},
}

@article {pmid40372510,
year = {2025},
author = {Budy, P and Pennock, CA and Messenger, S and Pehrson, H and Adler, E and Thiede, GP and Christman, NR and Crump, BC and Giblin, AE and Kling, GW},
title = {Rapid recovery of an arctic lake ecosystem from a pulse disturbance caused by thermokarst failure.},
journal = {Oecologia},
volume = {207},
number = {6},
pages = {82},
pmid = {40372510},
issn = {1432-1939},
support = {9911278//National Science Foundation/ ; },
mesh = {*Lakes ; Arctic Regions ; *Ecosystem ; Animals ; *Climate Change ; Fishes ; Zooplankton ; Invertebrates ; Food Chain ; },
abstract = {Due to rapid climate change, arctic ecosystems are experiencing an increase in disturbances including localized land-surface failures caused by melting ground ice (thermokarst failures). These failures result in the mass transport of sediment and organic materials into surface waters, with the potential to dramatically alter aquatic ecosystem function and biotic interactions. We coupled direct comparisons and long-term data of a suite of abiotic and biotic variables in a thermokarst-impacted lake and nearby reference lake to assess the impacts of thermokarst failure. After the thermokarst failure and relative to long-term averages, water transparency was substantially reduced. We hypothesized there would be subsequent changes to lower trophic levels and profound declines in fish foraging efficiency. However, these characteristics were within the range of natural variability and/or rapidly recovered to values within the range of long-term variability. In addition, although there was limited evidence of taxa-specific changes, we did not observe any strong changes in the total relative densities, growth rates, or composition of the bacterioplankton and zooplankton communities, benthic macroinvertebrates, or changes in fish diet, that could be attributed statistically to the thermokarst event. In sum, the thermokarst disturbance had substantial effects on water transparency and some lower trophic levels, which surprisingly were not manifested in higher trophic levels. Overall, the lake ecosystem appeared resistant to thermokarst disturbance with rapid recovery within two years after the disturbance.},
}

*Lakes
Arctic Regions
*Ecosystem
Animals
*Climate Change
Fishes
Zooplankton
Invertebrates
Food Chain

@article {pmid40367040,
year = {2025},
author = {Koch, ED and Mônico, AT and Dayrell, JS and Ferreira, AS and Dantas, SP and Moravec, J and Lima, AP},
title = {A remarkable new blue Ranitomeya species (Anura: Dendrobatidae) with copper metallic legs from open forests of Juruá River Basin, Amazonia.},
journal = {PloS one},
volume = {20},
number = {5},
pages = {e0321748},
doi = {10.1371/journal.pone.0321748},
pmid = {40367040},
issn = {1932-6203},
abstract = {Poison dart frogs (Dendrobatidae) are known for their aposematic coloration and toxic skin, making them a frequent subject of interest and research. However, descriptions of new species of Ranitomeya were interrupted for more than a decade. The implementation of a RAPELD (Rapid Assessment surveys of Long-Term Ecological Research) module in the Juruá River basin, a highly biodiverse and underexplored region, led to the record of a Ranitomeya species with blue dorsal stripes and coppery limbs. Herein we use morphological, morphometric, advertisement call, natural history, tadpole data and genetic data to describe the new species. Our phylogenetic analysis places the species within the Ranitomeya vanzolinii clade, and all delimitation methods confirmed its status as a new species. The species is characterized by its (i) small size (snout-vent length: males 15.2-17.0 mm, females 14.4-16.9 mm), (ii) dorsum with light sky-blue stripes on a reddish-brown ground, and metallic copper limbs with reddish-brown spots, (iii) ring-shaped granular region on the belly, (iv) toes with poorly developed lateral fringes, (v) later tadpole stages with tooth rows P1 = P2 > P3, P3 of 83-87% of P1, and conspicuous light sky-blue dorsal stripes, and (vi) cricket-like advertisement call consisting of 16-35 notes, call duration of 490-1,005 ms, note duration of 8.2-16.9 ms and dominant frequency of 5,168-6,029 Hz. The discovery of the new species emphasizes the significance of researching under-sampled regions like the Juruá River basin, and the usefulness of using a multidisciplinary approach to reveal new dendrobatid species.},
}

@article {pmid40349472,
year = {2025},
author = {Koukianaki, EA and Lilli, MA and Efstathiou, D and Matthews, B and Knaebel, K and Pröll, G and Kobler, J and Dirnböck, T and Bäck, J and Mirtl, M and Nikolaidis, NP},
title = {Modeling soil functions of forested ecosystems.},
journal = {Journal of environmental management},
volume = {386},
number = {},
pages = {125636},
doi = {10.1016/j.jenvman.2025.125636},
pmid = {40349472},
issn = {1095-8630},
abstract = {Forests deliver essential ecosystem services that can be impacted by climate, land use and above ground biodiversity changes. Assessment of such impacts can be achieved through ecosystem modeling of interlinked above- and below-ground processes. In this study, the one-dimensional Integrated Critical Zone (1D-ICZ) model was used to simulate the soil functions of two mature forested ecosystems: Zöbelboden in Austria and Hyytiälä in Finland. Both are long-term ecosystem research (LTER) sites with extensive monitoring data. The model was initialized and calibrated using long-term observations and simulated the gross primary production (GPP), the total soil C stock and the concentrations of several components of soil chemistry. The C and N content of Zöbelboden soils (82.55 tC/ha and 3.76 tN/ha) are higher than Hyytiälä (38.61 tC/ha and 1.33 tN/ha) reflecting higher particulate organic matter (POM) accumulation. Temperature and light were found to be the primary limiting factors of plant growth in both sites, and precipitation a limiting factor only at Hyytiälä. Regarding the quantification of soil functions at Zöbelboden, GPP was 15.6 tC/ha/yr, soil C stock 82.6 tC/ha, N stock 3.8 tN/ha and soil CO2 flux 0.04 tC/ha/yr while for Hyytiala, GPP was 11.6 tC/ha/yr, soil C stock 38.6 tC/ha, N stock 1.3 tN/ha and soil CO2 flux 0.03 tC/ha/yr. The model can be used to understand the limitations of plant growth and carbon sequestration, processes significant to climate mitigation.},
}

@article {pmid40343684,
year = {2025},
author = {Jiang, R and Liu, W and Pennings, SC},
title = {Global warming disrupts the relative allocation between sexual and clonal reproduction in a common salt marsh plant.},
journal = {Ecology},
volume = {106},
number = {5},
pages = {e70101},
doi = {10.1002/ecy.70101},
pmid = {40343684},
issn = {1939-9170},
support = {32222054//National Natural Science Foundation of China/ ; OCE-0620959//US National Science Foundation awards to the Georgia Coastal Ecosystems Long-Term Ecological Research Program/ ; OCE-1237140//US National Science Foundation awards to the Georgia Coastal Ecosystems Long-Term Ecological Research Program/ ; OCE-1832178//US National Science Foundation awards to the Georgia Coastal Ecosystems Long-Term Ecological Research Program/ ; OCE-9982133//US National Science Foundation awards to the Georgia Coastal Ecosystems Long-Term Ecological Research Program/ ; },
abstract = {Adjusting relative allocation between sexual and clonal reproduction is part of how plants respond to a variable environment, but we know little about how the allocation strategies of plant populations vary over time as abiotic conditions change. We studied correlations between sexual and clonal reproduction using 23 years of data on the clonal salt marsh plant Spartina alterniflora at eight sites in coastal Georgia, USA. The relationship between sexual reproduction and clonal reproduction varied over time. Within years, sexual reproduction was negatively related to clonal reproduction. These relationships were stronger in cooler years and weaker in warmer years, with slopes ranging from -0.202 in cool years to -0.013 in warm years. The trade-offs were also affected by river discharge, with stronger (more negative) slopes as river discharge increased. In a random forest model, temperature had the greatest influence (58%) on the relationships compared to other global change variables (precipitation, river discharge, sea level, and tide range). Overall, our study demonstrated that climate warming gradually disrupts the negative correlation in allocation between reproductive modes in a common salt marsh plant, shifting the affected populations toward a near-total reliance on clonal reproduction, potentially limiting their spread and the generation of new genotypes.},
}

@article {pmid40282286,
year = {2025},
author = {D'Onofrio, R and Vitelletti, ML and Riminucci, F and Rossi, V and Capotondi, L},
title = {Virgulinella fragilis in the North Adriatic Coastal Sediments: A New Non-Indigenous Benthic Foraminiferal Taxon?.},
journal = {Biology},
volume = {14},
number = {4},
pages = {},
doi = {10.3390/biology14040421},
pmid = {40282286},
issn = {2079-7737},
support = {B53C22002150006//EU - Next Generation EU Mission 4 "Education and Research" - Component 2: "From research to business" - Investment 3.1: "Fund for the realization of an integrated system of research and in-novation infrastructures" - Project IR0000032 - ITINERIS - Italian/ ; },
abstract = {The Mediterranean Sea is considered a hotspot for bioinvaders. Nonetheless, information on non-indigenous benthic foraminifera is still fragmented. This study documents for the first time the presence along the northwestern Adriatic coast of the non-indigenous benthic foraminifera species Virgulinella fragilis, Grindell and Collen (1976). Due to the low abundance recorded in the study area, the presence of this species may represent an early colonization phase. We discuss the temporal and spatial patterns of V. fragilis arrival in the Mediterranean and Adriatic Seas, and we hypothesize stowaway transport (via ship fouling or ballast water) as the main introduction pathway. Morphological test analyses suggest that V. fragilis prefers a low oxygen content, consistent with the ecological requirements reported for this taxon in the literature. The application of Maximum Entropy (MaxEnt) modeling indicates that the key factor influencing the presence of V. fragilis in the Mediterranean basin is the bacterial concentration expressed as NO3. Projections under future climate scenarios (RCP 4.5) point to a decline of habitat suitability conditions, making widespread invasion unlikely in the Mediterranean. We emphasize the importance of continuous biomonitoring for early detection of alien species, improving our understanding of invasion dynamics and enabling prompt conservation actions, especially in regions impacted by anthropogenic activities.},
}

@article {pmid40179081,
year = {2025},
author = {Blumstein, DT},
title = {The end of long-term ecological data?.},
journal = {PLoS biology},
volume = {23},
number = {4},
pages = {e3003102},
doi = {10.1371/journal.pbio.3003102},
pmid = {40179081},
issn = {1545-7885},
mesh = {*Ecology ; Humans ; *Information Dissemination ; Ecosystem ; },
abstract = {Can we ever have too much ecological field data? Are data-sharing norms and the environmental costs of travel disincentivizing its collection? Allocating proper funding and resources to the collection of long-term ecological data is essential for studies of behavior and adaptation, which are particularly important in the face of anthropogenic change.},
}

*Ecology
Humans
*Information Dissemination
Ecosystem

@article {pmid40178287,
year = {2025},
author = {Rodrigues, AC and Granzotti, RV and Dos Santos, NCL and Agostinho, AA and Gomes, LC},
title = {Non-Native Species Abundance Decreases the Co-Occurrence Between Native and Non-Native Species Through Time at Any Phylogenetic Distance.},
journal = {Ecology letters},
volume = {28},
number = {4},
pages = {e70107},
doi = {10.1111/ele.70107},
pmid = {40178287},
issn = {1461-0248},
support = {141154/2018-7//Conselho Nacional de Desenvolvimento Científico e Tecnológico/ ; },
mesh = {Animals ; *Phylogeny ; *Introduced Species ; *Fishes/physiology/genetics/classification ; Brazil ; Population Density ; Population Dynamics ; Ecosystem ; },
abstract = {Non-native species may cause cumulative impacts on native communities if their abundance continues to increase through time. This negative effect can reflect on the spatial distribution of native species, especially when native and non-native species are phylogenetically similar. Here, we assessed the spatial co-occurrence between native and non-native fish species using long-term abundance data from six locations in a Brazilian floodplain. We tested whether the co-occurrence of native and non-native species is influenced by non-native species abundance and time since first record, and whether the abundance effect is mediated by the phylogenetic relatedness between native and non-native species. We found that non-native abundance was more influential than the time since first record and co-occurrence between native and non-native species was lower when the non-native abundance was high, regardless of phylogenetic relatedness. The interannual variability in non-native species abundance may overshadow long-term trends in determining the temporal effects of non-native species.},
}

Animals
*Phylogeny
*Introduced Species
*Fishes/physiology/genetics/classification
Brazil
Population Density
Population Dynamics
Ecosystem

@article {pmid40175660,
year = {2025},
author = {Chaumet, B and Riboul, D and Probst, JL and Eon, P and Probst, A},
title = {Seasonal Influence on Pesticide Transfer and Bioaccumulation in Native Wetland Vegetation in an Agricultural Critical Zone.},
journal = {Environmental management},
volume = {},
number = {},
pages = {},
pmid = {40175660},
issn = {1432-1009},
support = {ANR-18-CE32-0007//Agence Nationale de la Recherche/ ; ANR-18-CE32-0007//Agence Nationale de la Recherche/ ; ANR-18-CE32-0007//Agence Nationale de la Recherche/ ; ANR-18-CE32-0007//Agence Nationale de la Recherche/ ; ANR-18-CE32-0007//Agence Nationale de la Recherche/ ; },
abstract = {Wetlands are acknowledged for their significant role in mitigating contaminant fluxes to aquatic environments. However, the contribution of intrinsic vegetation to the efficacy of wetlands in dispersing pesticides remains a subject of debate. This study seeks to quantify: (1) the ability of native wetland plants to bioaccumulate pesticides in distinct compartments (roots, stems, leaves), and (2) the transfer of pesticides from sediments and water to plants, as well as within plants. Two field campaigns were conducted in a pond located in an agricultural area during two contrasting seasons: autumn and the subsequent summer. Six pesticides (metolachlor, boscalid, epoxiconazole, tebuconazole, aclonifen and pendimethalin) typical of arable farming practices and with different chemical properties were analysed in samples taken from five native plant species: Salix alba L., Carex pendula Huds, Mentha aquatica L., Typha latifolia L. and Juncus inflexus L. A new method was developed to analyse pesticides by using thermo desorption GC-MS which allowed a sensitive quantification in all plant compartments. Pesticides were found in all the plants, but Salix alba and Carex pendula proved to be the most effective accumulators of pesticides compared to other species, and showed perennial accumulation over time. The most hydrophobic molecules were mainly found in leaves, partly due to translocation. The impact of flood events, which introduced a significant amount of pesticides from the upper drainage catchment into the pond between the two sampling campaigns, was evident in terms of storage by plants. This study highlights the importance of revegetating ponds with native species as part of a wetlands remediation plan.},
}

@article {pmid40172486,
year = {2025},
author = {Davidson, JL and McKnight, KR and Szojka, M and Gannon, D and Wisnoski, NI and Werner, CM and Liang, M and Seabloom, EW and Ray, C and DeSiervo, MH and Shoemaker, LG},
title = {Effects of Disturbance and Fertilisation on Plant Community Synchrony, Biodiversity and Stability Through Succession.},
journal = {Ecology letters},
volume = {28},
number = {4},
pages = {e70052},
doi = {10.1111/ele.70052},
pmid = {40172486},
issn = {1461-0248},
support = {DEB-0620652//U.S. National Science Foundation Long-Term Ecological Research Program/ ; DEB-1234162//U.S. National Science Foundation Long-Term Ecological Research Program/ ; DEB-1831944//U.S. National Science Foundation Long-Term Ecological Research Program/ ; 80NSSC20M0113//Wyoming Space Grant Consortium/ ; 1655726//National Science Foundation/ ; 2019528//National Science Foundation/ ; 2033292//National Science Foundation/ ; 2021-067034-35231//National Institute of Food and Agriculture/ ; 2023-03539//National Institute of Food and Agriculture/ ; },
mesh = {*Biodiversity ; *Grassland ; *Nitrogen ; Soil/chemistry ; Fertilizers/analysis ; Plants ; Ecosystem ; Models, Biological ; },
abstract = {Global change drivers alter multiple components of community composition, with cascading impacts on ecosystem stability. However, it remains largely unknown how interactions among global change drivers will alter community synchrony, especially across successional timescales. We analysed a 22-year time series of grassland community data from Cedar Creek, USA, to examine the joint effects of pulse soil disturbance and press nitrogen addition on community synchrony, richness, evenness and stability during transient and post-transient periods of succession. Using multiple regression and structural equation modelling, we found that nitrogen addition and soil disturbance decreased both synchrony and stability, thereby weakening the negative synchrony-stability relationship. We found evidence of the portfolio effect during transience, but once communities settled on a restructured state post-transience, diversity no longer influenced the synchrony-stability relationship. Differences between transient and post-transient drivers of synchrony and stability underscore the need for long-term data to inform ecosystem management under ongoing global change.},
}

*Biodiversity
*Grassland
*Nitrogen
Soil/chemistry
Fertilizers/analysis
Plants
Ecosystem
Models, Biological

@article {pmid40108841,
year = {2025},
author = {Quinlan, ZA and Nelson, CE and Koester, I and Petras, D and Nothias, LF and Comstock, J and White, BM and Aluwihare, LI and Bailey, BA and Carlson, CA and Dorrestein, PC and Haas, AF and Wegley Kelly, L},
title = {Microbial Community Metabolism of Coral Reef Exometabolomes Broadens the Chemodiversity of Labile Dissolved Organic Matter.},
journal = {Environmental microbiology},
volume = {27},
number = {3},
pages = {e70064},
doi = {10.1111/1462-2920.70064},
pmid = {40108841},
issn = {1462-2920},
support = {OCE-1637396//US National Science Foundation, Moorea Coral Reef Long-Term Ecological Research/ ; OCE-2023298//US National Science Foundation/ ; OCE-2023509//US National Science Foundation/ ; OCE-2118617//US National Science Foundation/ ; OCE-2118618//US National Science Foundation/ ; GRFP-2019252845//US National Science Foundation/ ; ProjectA/AS-1//National Oceanic and Atmospheric Administration/ ; NA24OARX417C0024-T1-01//University of Hawaii Sea Grant College Program, School of Ocean and Earth Science and Technology (SOEST)/ ; 4949//Hawaii Sea Grant publication/ ; 11904//SOEST/ ; },
mesh = {*Coral Reefs ; Animals ; *Anthozoa/microbiology/metabolism ; *Microbiota ; Organic Chemicals/metabolism ; Seawater/microbiology/chemistry ; Bacteria/metabolism/classification ; Metabolome ; Ecosystem ; },
abstract = {Dissolved organic matter (DOM) comprises diverse compounds with variable bioavailability across aquatic ecosystems. The sources and quantities of DOM can influence microbial growth and community structure with effects on biogeochemical processes. To investigate the chemodiversity of labile DOM in tropical reef waters, we tracked microbial utilisation of over 3000 untargeted mass spectrometry ion features exuded from two coral and three algal species. Roughly half of these features clustered into over 500 biologically labile spectral subnetworks annotated to diverse structural superclasses, including benzenoids, lipids, organic acids, heterocyclics and phenylpropanoids, comprising on average one-third of the ion richness and abundance within each chemical class. Distinct subsets of these labile compounds were exuded by algae and corals during the day and night, driving differential microbial growth and substrate utilisation. This study expands the chemical diversity of labile marine DOM with implications for carbon cycling in coastal environments.},
}

*Coral Reefs
Animals
*Anthozoa/microbiology/metabolism
*Microbiota
Organic Chemicals/metabolism
Seawater/microbiology/chemistry
Bacteria/metabolism/classification
Metabolome
Ecosystem

@article {pmid40104958,
year = {2025},
author = {Williams, LJ and Kovach, KR and Guzmán Q, JA and Stefanski, A and Bermudez, R and Butler, EE and Coq-Etchegaray, D and Glenn-Stone, C and Hajek, P and Klama, J and Medlyn, BE and Messier, C and Moradi, A and Paquette, A and Park, MH and Scherer-Lorenzen, M and Townsend, PA and Reich, PB and Cavender-Bares, J and Schuman, MC},
title = {Tree diversity shapes the spectral signature of light transmittance in developing forests.},
journal = {Ecology},
volume = {106},
number = {3},
pages = {e70032},
doi = {10.1002/ecy.70032},
pmid = {40104958},
issn = {1939-9170},
support = {//Albert-Ludwigs-Universität Freiburg (Innovationsfonds Forschung)/ ; NSF-DEB-1831944//National Science Foundation Long Term Ecological Research/ ; //NOMIS Foundation/ ; NSF-DBI-2021898//National Science Foundation Division of Biological Infrastructure/ ; NSF-DEB-1638720//National Science Foundation Division of Environmental Biology/ ; },
mesh = {*Forests ; *Trees/physiology ; *Light ; *Biodiversity ; Plant Leaves/physiology/growth & development ; },
abstract = {Greater tree diversity often increases forest productivity by increasing the fraction of light captured and the effectiveness of light use at the community scale. However, light may shape forest function not only as a source of energy or a cause of stress but also as a context cue: Plant photoreceptors can detect specific wavelengths of light, and plants use this information to assess their neighborhoods and adjust their patterns of growth and allocation. These cues have been well documented in laboratory studies, but little studied in diverse forests. Here, we examined how the spectral profile of light (350-2200 nm) transmitted through canopies differs among tree communities within three diversity experiments on two continents (200 plots each planted with one to 12 tree species, amounting to roughly 10,000 trees in total), laying the groundwork for expectations about how diversity in forests may shape light quality with consequences for forest function. We hypothesized-and found-that the species composition and diversity of tree canopies influenced transmittance in predictable ways. Canopy transmittance-in total and in spectral regions with known biological importance-principally declined with increasing leaf area per ground area (LAI) and, in turn, LAI was influenced by the species composition and diversity of communities. For a given LAI, broadleaved angiosperm canopies tended to transmit less light with lower red-to-far-red ratios than canopies of needle-leaved gymnosperms or angiosperm-gymnosperm mixtures. Variation among communities in the transmittance of individual leaves had a minor effect on canopy transmittance in the visible portion of the spectrum but contributed beyond this range along with differences in foliage arrangement. Transmittance through mixed species canopies often deviated from expectations based on monocultures, and this was only partly explained by diversity effects on LAI, suggesting that diversity effects on transmittance also arose through shifts in the arrangement and optical properties of foliage. We posit that differences in the spectral profile of light transmitted through diverse canopies serve as a pathway by which tree diversity affects some forest ecosystem functions.},
}

*Forests
*Trees/physiology
*Light
*Biodiversity
Plant Leaves/physiology/growth & development

@article {pmid40104948,
year = {2025},
author = {Reed, D and Chavez, S and Castañeda-Moya, E and Oberbauer, SF and Troxler, T and Malone, S},
title = {Resilience to Hurricanes Is High in Mangrove Blue Carbon Forests.},
journal = {Global change biology},
volume = {31},
number = {3},
pages = {e70124},
doi = {10.1111/gcb.70124},
pmid = {40104948},
issn = {1365-2486},
support = {P16AC00032//Everglades National Park/ ; P17AC01282//Everglades National Park/ ; DEB-9910514//National Science Foundation/ ; DBI-0620409//National Science Foundation/ ; DEB-1237517//National Science Foundation/ ; DEB-1832229//National Science Foundation/ ; DEB-2025954//National Science Foundation/ ; //Yale School of the Environment, and the Yale Center for Natural Carbon Capture/ ; //The Florida Coastal Everglades Long-Term Ecological Research/ ; },
mesh = {*Cyclonic Storms ; *Wetlands ; Florida ; Forests ; Carbon Dioxide/metabolism/analysis ; Carbon Cycle ; Carbon/metabolism ; Photosynthesis ; },
abstract = {Mangrove forests are typically considered resilient to natural disturbances, likely caused by the evolutionary adaptation of species-specific traits. These ecosystems play a vital role in the global carbon cycle and are responsible for an outsized contribution to carbon burial and enhanced sedimentation rates. Using eddy covariance data from two coastal mangrove forests in the Florida Coastal Everglades, we evaluated the impact hurricanes have on mangrove forest structure and function by measuring recovery to pre-disturbance conditions following Hurricane Wilma in 2005 and Hurricane Irma in 2017. We determined the "recovery debt," the deficit in ecosystem structure and function following a disturbance, using the leaf area index (LAI) and the net ecosystem exchange (NEE) of carbon dioxide (CO2). Calculated as the cumulative deviation from pre-disturbance conditions, the recovery debt incorporated the recapture of all the carbon lost due to the disturbance. In Everglades mangrove forests, LAI returned to pre-disturbance levels within a year, and ecosystem respiration and maximum photosynthetic rates took much longer, resulting in an initial recovery debt of 178 g C m[-2] at the tall forest with limited impacts at the scrub forest. At the landscape scale, the initial recovery debt was 0.40 Mt C, and in most coastal mangrove forests, all lost carbon was recovered within just 4 years. While high-intensity storms could have prolonged impacts on the structure of subtropical forests, fast canopy recovery suggests these ecosystems will remain strong carbon sinks.},
}

*Cyclonic Storms
*Wetlands
Florida
Forests
Carbon Dioxide/metabolism/analysis
Carbon Cycle
Carbon/metabolism
Photosynthesis

@article {pmid40066697,
year = {2025},
author = {Peters, JR and Reed, DC and Shrestha, J and Hamilton, SL and Burkepile, DE},
title = {Frequent disturbance to a foundation species disrupts consumer-mediated nutrient cycling in giant kelp forests.},
journal = {Ecology},
volume = {106},
number = {3},
pages = {e70019},
doi = {10.1002/ecy.70019},
pmid = {40066697},
issn = {1939-9170},
support = {OCE-1547952//NSF/ ; 0620276//Long-Term Ecological Research Program/ ; 1232779//Long-Term Ecological Research Program/ ; OCE 9982105//Long-Term Ecological Research Program/ ; },
abstract = {Structure-forming foundation species facilitate consumers by providing habitat and refugia. In return, consumers can benefit foundation species by reducing top-down pressures and increasing the supply of nutrients. Consumer-mediated nutrient dynamics (CND) fuel the growth of autotrophic foundation species and generate more habitat for consumers, forming reciprocal feedbacks. Such feedbacks are threatened when foundation species are lost to disturbances, yet testing these interactions requires long-term studies, which are rare. Here, we experimentally evaluated how disturbance to giant kelp, a marine foundation species, affects (1) CND of the forest animal community and (2) nutrient feedbacks that help sustain forest primary production during extended periods of low nitrate. Our experiment involved removing giant kelp annually during the winter for 10 years at four sites to mimic frequent wave disturbance. We paired temporal changes in the forest community in kelp removal and control plots with estimates of taxon-specific ammonium excretion rates (reef fishes and macroinvertebrates) and nitrogen (N) demand (giant kelp and understory macroalgae) to determine the effects of disturbance on CND as measured by ammonium excretion, N demand by kelp forest macroalgae, and the percentage of nitrogen demand met by ammonium excretion. We found that disturbance to giant kelp decreased ammonium excretion by 66% over the study, mostly due to declines in fishes. Apart from a few fish species that dominated CND, most reef-associated consumers were unaffected by disturbance. Disturbance to giant kelp reduced its N demand by 56% but increased that of the understory by 147% due to its increased abundance in the absence of a kelp canopy. Overall, disturbance had little effect on the fraction of N demand of macroalgae met by consumer excretion due to the offsetting responses of giant kelp, understory macroalgae, and consumers to disturbance. Across both disturbance regimes, on average, consumers supported 11%-12% of the N required by all kelp forest macroalgae and 48% of N demand by the understory macroalgae (which are confined to the benthos where most reef-associated consumers reside). Our findings suggest that CND constitutes a considerable contribution of N required in kelp forests, yet nutrient inputs decrease following reductions in essential habitat perpetuated by frequent disturbances.},
}

@article {pmid40010164,
year = {2025},
author = {Escamade, NMMU and Lemos, VM and Garcia, AM},
title = {Temporal trends in estuarine-resident fishes: Functional traits and responses to environmental and climatic variability.},
journal = {Marine environmental research},
volume = {205},
number = {},
pages = {107019},
doi = {10.1016/j.marenvres.2025.107019},
pmid = {40010164},
issn = {1879-0291},
abstract = {Extreme climatic events, such as El Niño, are becoming increasingly intense and frequent, driving hydrodynamic changes in estuaries and significantly affecting their structure and biodiversity. Using long-term data (22 years) obtained from standardized surveys, we analyzed the abundance of three estuarine-resident species (Atherinella brasiliensis, Jenynsia lineata, Ctenogobius shufeldti) with distinct functional traits (related to reproductive strategy, feeding, and habitat use) and their relationships with local, regional, and climatic environmental factors in a subtropical estuary. We investigated the following hypotheses: (i) there is a long-term declining trend in the abundance of these estuarine-resident species; (ii) reductions in their abundance are associated with El Niño events; (iii) the abundance of species with different functional traits responds similarly to the effects of El Niño events. The analysis revealed a consistent decline in the abundance of all three estuarine-resident species, driven by local and regional factors and climatic variations, despite differences in their functional traits. Generalized linear models showed that El Niño events impact species in distinct ways, with more pronounced effects on oviparous species (A. brasiliensis and C. shufeldti) compared to viviparous ones (J. lineata). These findings provide empirical evidence of decadal changes decline in the abundance of estuarine-resident fishes regardless of their distinct functional traits, raising concerns to the conservation of ecological functions and ecosystem services in subtropical estuaries under increasing anthropogenic and climatic pressures.},
}

@article {pmid39996280,
year = {2025},
author = {Dos Reis, RB and Roloff, MZ and Pedroso, TH and Reinas, GCZ and Stabile, BHM and Martins, IC and Carvalho, FR},
title = {First record of the non-native species Bryconops aff. melanurus (Bloch, 1794) (Characiformes: Iguanodectidae) in the Paraná River floodplain, upper Paraná River basin, Brazil.},
journal = {Journal of fish biology},
volume = {},
number = {},
pages = {},
doi = {10.1111/jfb.70008},
pmid = {39996280},
issn = {1095-8649},
support = {88887.629034/2021-00//Coordenação de Aperfeiçoamento de Pessoal de Nível Superior/ ; 88887.967204/2024-00//Coordenação de Aperfeiçoamento de Pessoal de Nível Superior/ ; 88887.911663/2023-00//Coordenação de Aperfeiçoamento de Pessoal de Nível Superior/ ; 88887.967191/2024-00//Coordenação de Aperfeiçoamento de Pessoal de Nível Superior/ ; 88887.629037/2021-00//Coordenação de Aperfeiçoamento de Pessoal de Nível Superior/ ; 88887.894166/2023-00//Coordenação de Aperfeiçoamento de Pessoal de Nível Superior/ ; },
abstract = {This study presents the first record of the non-native species Bryconops aff. melanurus (Bloch 1794) within the upper Paraná River floodplain in Brazil. Two specimens were collected in December 2023 as part of a long-term ecological research programme (PELD). A morphological analysis confirmed species identity. The introduction of B. aff. melanurus into this region raises concerns about its potential impact on the local ichthyofauna because of its dietary plasticity and the disturbed nature of the ecoregion. It is essential to conduct continuous monitoring to assess the ecological implications of the introduction.},
}

@article {pmid39995359,
year = {2025},
author = {Te, N and Griffin-Nolan, RJ and Slette, IJ and Shi, Y and Song, L and Chen, J and Wang, H and Qian, J and Yu, Q and Wang, Z and Lü, X and Han, X and Klimešová, J and Collins, SL and Luo, W},
title = {Grassland bud and shoot demographic responses to single and recurrent droughts vary across an aridity gradient.},
journal = {Ecology},
volume = {106},
number = {2},
pages = {e70002},
doi = {10.1002/ecy.70002},
pmid = {39995359},
issn = {1939-9170},
support = {32422057//National Natural Science Foundation of China/ ; 2020199//Youth Innovation Promotion Association of the Chinese Academy of Sciences/ ; },
mesh = {*Droughts ; *Grassland ; *Plant Shoots/physiology/growth & development ; China ; },
abstract = {Clonal demographic traits play important roles in regulating community dynamics. Yet, it remains unclear how the responses of these clonal traits to drought might depend on previous drought exposure, and how drought responses vary among grasslands. We conducted a repeated drought experiment across four grasslands along an aridity gradient in northern China. We assessed the effects of single (precipitation reduction in 2021-2022) versus recurrent (precipitation reduction in 2015-2018 and 2021-2022) drought on bud density, shoot density, and the ratio of bud to shoot density. Drought reduced bud density at all grasslands and shoot density at most grasslands. Drought reduced the ratio of bud-to-shoot density only in the most arid grasslands. Recurrent drought had larger negative effects than a single drought on bud density and composition of bud and shoot at only one of four grasslands, and on shoot density at two of four grasslands. Our results suggest that previous drought exposure can alter the response of plant clonal demographic traits to subsequent drought in some but not all grasslands, and that responses can vary with mean climate.},
}

*Droughts
*Grassland
*Plant Shoots/physiology/growth & development
China

@article {pmid39673195,
year = {2025},
author = {Heredia-Velásquez, AM and Sarkar, S and Thomas, FW and Baza, AC and Garcia-Pichel, F},
title = {Urea-based mutualistic transfer of nitrogen in biological soil crusts.},
journal = {The ISME journal},
volume = {19},
number = {1},
pages = {},
doi = {10.1093/ismejo/wrae246},
pmid = {39673195},
issn = {1751-7370},
support = {DEB 2129537//National Science Foundation/ ; DEB 2025166//Graduate Research Fellowship Program from the Jornada Range LTER/ ; },
mesh = {*Urea/metabolism ; *Nitrogen/metabolism ; *Soil Microbiology ; *Symbiosis ; *Cyanobacteria/metabolism/genetics ; Coculture Techniques ; },
abstract = {Foundational to the establishment and recovery of biocrusts is a mutualistic exchange of carbon for nitrogen between pioneer cyanobacteria, including the widespread Microcoleus vaginatus, and heterotrophic diazotrophs in its "cyanosphere". In other such mutualisms, nitrogen is transferred as amino acids or ammonium, preventing losses through specialized structures, cell apposition or intracellularity. Yet, in the biocrust symbiosis relative proximity achieved through chemotaxis optimizes the exchange. We posited that further partner specificity may stem from using an unusual nitrogen vehicle, urea. We show that representative mutualist M. vaginatus PCC 9802 possesses genes for urea uptake, two ureolytic systems, and the urea cycle, overexpressing only uptake and the rare urea carboxylase/allophanate hydrolase (uc/ah) when in co-culture with mutualist Massilia sp. METH4. In turn, it overexpresses urea biosynthesis, but neither urease nor urea uptake when in co-culture. On nitrogen-free medium, three cyanosphere isolates release urea in co-culture with M. vaginatus but not in monoculture. Conversely, M. vaginatus PCC 9802 grows on urea down to the low micromolar range. In natural biocrusts, urea is at low and stable concentrations that do not support the growth of most local bacteria, but aggregates of mutualists constitute dynamic microscale urea hotspots, and the cyanobacterium responds chemotactically to urea. The coordinated gene co-regulation, physiology of cultured mutualists, distribution of urea pools in nature, and responses of native microbial populations, all suggest that low-concentration urea is likely the main vehicle for interspecies N transfer, helping attain partner specificity, for which the rare high-affinity uc/ah system of Microcoleus vaginatus is likely central.},
}

*Urea/metabolism
*Nitrogen/metabolism
*Soil Microbiology
*Symbiosis
*Cyanobacteria/metabolism/genetics
Coculture Techniques

@article {pmid39967421,
year = {2025},
author = {Schulz, AN and Havill, NP and Marsico, TD and Ayres, MP and Gandhi, KJK and Herms, DA and Hoover, AM and Hufbauer, RA and Liebhold, AM and Raffa, KF and Thomas, KA and Tobin, PC and Uden, DR and Mech, AM},
title = {What Is a Specialist? Quantifying Host Breadth Enables Impact Prediction for Invasive Herbivores.},
journal = {Ecology letters},
volume = {28},
number = {2},
pages = {e70083},
doi = {10.1111/ele.70083},
pmid = {39967421},
issn = {1461-0248},
support = {19-DG-11132544-022//USDA Forest Service National Urban and Community Forestry Advisory Council/ ; MISZ-069550//USDA National Institute of Food and Agriculture McIntire-Stennis Cooperative Forestry Research Program/ ; G16AC00065//U.S. Geological Survey John Wesley Powell Center for Analysis and Synthesis/ ; ME022124//USDA National Institute of Food and Agriculture Hatch Projects/ ; 1012868//USDA National Institute of Food and Agriculture Hatch Projects/ ; 15-JV-11242303-103//USDA Forest Service Eastern Forest Environmental Threat Assessment/ ; 1637685//National Science Foundation Long Term Ecological Research Network/ ; //David R.M. Scott Endowed Professorship in Forest Resources/ ; //U.S. Geological Survey Ecosystems Mission Area/ ; //USDA Forest Service International Programs/ ; },
mesh = {Animals ; *Herbivory ; *Introduced Species ; *Insecta/physiology ; Phylogeny ; North America ; Trees ; Models, Biological ; },
abstract = {Herbivores are commonly classified as host specialists or generalists for various purposes, yet the definitions of these terms, and their intermediates, are often imprecise and ambiguous. We quantified host breadth for 240 non-native, tree-feeding insects in North America using phylogenetic diversity. We demonstrated that a partitioning of host breadth: (1) causes 67% of non-native insects to shift from a generalist to specialist category, (2) displays a reduction in host breadth from the native to introduced range, (3) identifies an inflection point in a model predicting the likelihood of non-native insect ecological impact, with a corresponding change in behaviour associated with specialists versus generalists, and (4) enables three models for strong prediction of whether a non-native forest insect will cause high impacts. Together, these results highlight the primacy of how herbivore host recognition and plant defences mediate whether novel host interactions will result in high impact after invasion.},
}

Animals
*Herbivory
*Introduced Species
*Insecta/physiology
Phylogeny
North America
Trees
Models, Biological

@article {pmid39887645,
year = {2025},
author = {Daraghmeh, N and Exter, K and Pagnier, J and Balazy, P and Cancio, I and Chatzigeorgiou, G and Chatzinikolaou, E and Chelchowski, M and Chrismas, NAM and Comtet, T and Dailianis, T and Deneudt, K and Diaz de Cerio, O and Digenis, M and Gerovasileiou, V and González, J and Kauppi, L and Kristoffersen, JB and Kukliński, P and Lasota, R and Levy, L and Małachowicz, M and Mavrič, B and Mortelmans, J and Paredes, E and Poćwierz-Kotus, A and Reiss, H and Santi, I and Sarafidou, G and Skouradakis, G and Solbakken, J and Staehr, PAU and Tajadura, J and Thyrring, J and Troncoso, JS and Vernadou, E and Viard, F and Zafeiropoulos, H and Zbawicka, M and Pavloudi, C and Obst, M},
title = {A Long-Term Ecological Research Data Set From the Marine Genetic Monitoring Program ARMS-MBON 2018-2020.},
journal = {Molecular ecology resources},
volume = {},
number = {},
pages = {e14073},
doi = {10.1111/1755-0998.14073},
pmid = {39887645},
issn = {1755-0998},
support = {MIS5002670//Center for the study and sustainable exploitation of Marine Biological Resources/ ; CF21-0564//Carlsbergfondet/ ; 3181-2019//Havs- och Vattenmyndigheten/ ; 730984//ASSEMBLE Plus/ ; //North Sea Program of the European Regional Development Fund of the European Union/ ; 2019-00242//Swedish Biodiversity Data Infrastructure/ ; MIS384676//LifeWatchGreece/ ; 101112823//DTO-bioflow/ ; I000819N//Research Foundation Flanders/ ; 264089//MARBIGEN EU Regpot/ ; //European Marine Biological Resource Centre (EMBR-ERIC)/ ; //Aage V. Jensen Foundation/ ; EAPA_501/2016//INTERREG EBB/ ; 101082021//MARCO BOLO/ ; 824087//H2020 EOSC-Life/ ; //FONDATION Total/ ; },
abstract = {Molecular methods such as DNA/eDNA metabarcoding have emerged as useful tools to document the biodiversity of complex communities over large spatio-temporal scales. We established an international Marine Biodiversity Observation Network (ARMS-MBON) combining standardised sampling using autonomous reef monitoring structures (ARMS) with metabarcoding for genetic monitoring of marine hard-bottom benthic communities. Here, we present the data of our first sampling campaign comprising 56 ARMS units deployed in 2018-2019 and retrieved in 2018-2020 across 15 observatories along the coasts of Europe and adjacent regions. We describe the open-access data set (image, genetic and metadata) and explore the genetic data to show its potential for marine biodiversity monitoring and ecological research. Our analysis shows that ARMS recovered more than 60 eukaryotic phyla capturing diversity of up to ~5500 amplicon sequence variants and ~1800 operational taxonomic units, and up to ~250 and ~50 species per observatory using the cytochrome c oxidase subunit I (COI) and 18S rRNA marker genes, respectively. Further, ARMS detected threatened, vulnerable and non-indigenous species often targeted in biological monitoring. We show that while deployment duration does not drive diversity estimates, sampling effort and sequencing depth across observatories do. We recommend that ARMS should be deployed for at least 3-6 months during the main growth season to use resources as efficiently as possible and that post-sequencing curation is applied to enable statistical comparison of spatio-temporal entities. We suggest that ARMS should be used in biological monitoring programs and long-term ecological research and encourage the adoption of our ARMS-MBON protocols.},
}

@article {pmid39884192,
year = {2025},
author = {Julien, AR and Narron, CR and Mishra, DR},
title = {Expanding the flooding in Landsat across tidal systems model to Landsat 5-9 imagery for long-term marsh inundation analysis.},
journal = {The Science of the total environment},
volume = {965},
number = {},
pages = {178602},
doi = {10.1016/j.scitotenv.2025.178602},
pmid = {39884192},
issn = {1879-1026},
abstract = {Tidal flooding can significantly impact vegetation pixel reflectance of coastal salt marshes, presenting a problem for remote sensing studies of these highly productive ecosystems. The current study aimed to spatially and temporally expand our previously developed Flooding in Landsat Across Tidal Systems (FLATS) model to detect and analyze the long-term changes in flooded marsh pixels in Landsat 5-9 imagery. As the FLATS index is only calibrated for Landsat 8, our goal was to expand the use of FLATS to a greater range of Landsat imagery and facilitate the masking of flooded pixels in long-term time series of vegetation indices. Using areas of salt marsh in the Georgia Coastal Ecosystems (GCE) Long Term Ecological Research (LTER) site, images from Landsat 5 through 9 were paired with near-coincident Landsat 7 images for a novel cross-calibration. Indices in the FLATS algorithm (Normalized Difference Water Index, NDWI and the Enhanced Vegetation Index, EVI) were calibrated for each image pair using linear regression models, and an adjusted FLATS index (FLATS+) was created to be used on a substantially expanded Landsat dataset from 1984 to 2023. The R[2] scores for the vegetation index calibrations ranged from 0.78 to 0.87 for EVI, and 0.73-0.82 for NDWI. Additionally, this study sought to monitor changes in flooding patterns at the study site, utilizing the expanded temporal range of FLATS+. The trend in FLATS+ value exhibited significant spatial autocorrelation at three LTER sites, with areas of marsh experiencing significant changes in inundation over the 39-year period (Moran's I, p < 0.01 at all sites). The FLATS+ index is a tool that is able to identify flooded pixels in Landsat 5-9. The index can be used to study salt marsh productivity, carbon uptake, flooding, and resiliency in response to sea level rise.},
}

@article {pmid39837511,
year = {2025},
author = {Barnas, DM and Zeff, M and Silbiger, NJ},
title = {Submarine groundwater discharge drives both direct and indirect effects on organismal and community metabolism on coral reefs.},
journal = {Proceedings. Biological sciences},
volume = {292},
number = {2039},
pages = {20241554},
doi = {10.1098/rspb.2024.1554},
pmid = {39837511},
issn = {1471-2954},
support = {//National Science Foundation Graduate Research Fellowship Program/ ; //Gordon and Betty Moore Foundation/ ; //National Science Foundation Biological Oceanography/ ; //National Science Foundation Long-Term Ecological Research/ ; },
mesh = {*Coral Reefs ; Animals ; *Groundwater ; *Anthozoa/physiology ; Biodiversity ; Salinity ; Seawater/chemistry ; },
abstract = {Coral reefs experience numerous environmental gradients affecting organismal physiology and species biodiversity, which ultimately impact community metabolism. This study shows that submarine groundwater discharge (SGD), a common natural environmental gradient in coastal ecosystems associated with decreasing temperatures, salinity and pH with increasing nutrients, has both direct and indirect effects on coral reef community metabolism by altering individual growth rates and community composition. Our data revealed that SGD exposure hindered the growth of two algae, Halimeda opuntia and Valonia fastigiata, by 67 and 200%, respectively, and one coral, Porites rus, by 20%. Community metabolic rates showed altered community production, respiration and calcification between naturally high and low exposure areas mostly due to differences in community identity (i.e. species composition), rather than a direct effect of SGD on physiology. Production and calcification were 1.5 and 6.5 times lower in assemblages representing high SGD communities regardless of environment. However, the compounding effect of community identity and SGD exposure on respiration resulted in the low SGD community exhibiting the highest respiration rates under higher SGD exposure. By demonstrating SGD's role in altering community composition and metabolism, this research highlights the critical need to consider compounding environmental gradients (i.e. nutrients, salinity and temperature) in the broader context of ecosystem functions.},
}

*Coral Reefs
Animals
*Groundwater
*Anthozoa/physiology
Biodiversity
Salinity
Seawater/chemistry

@article {pmid39824754,
year = {2025},
author = {Cheaib, A and Waring, EF and McNellis, R and Perkowski, EA and Martina, JP and Seabloom, EW and Borer, ET and Wilfahrt, PA and Dong, N and Prentice, IC and Wright, IJ and Power, SA and Hersch-Green, EI and Risch, AC and Caldeira, MC and Nogueira, C and Chen, Q and Smith, NG},
title = {Soil Nitrogen Supply Exerts Largest Influence on Leaf Nitrogen in Environments with the Greatest Leaf Nitrogen Demand.},
journal = {Ecology letters},
volume = {28},
number = {1},
pages = {e70015},
doi = {10.1111/ele.70015},
pmid = {39824754},
issn = {1461-0248},
support = {grant agreement No: 787203 REALM/ERC_/European Research Council/International ; NSF-DEB-1234162 NSF-DEB-1831944//Long-Term Ecological Research/ ; DEB-2045968//Directorate for Biological Sciences/ ; NSF-DEB-1042132//National Science Foundation Research Coordination Network/ ; DG-0001-13//Institute on the Environment/ ; },
mesh = {*Nitrogen/metabolism ; *Plant Leaves/metabolism ; *Soil/chemistry ; *Photosynthesis ; Climate ; },
abstract = {Accurately representing the relationships between nitrogen supply and photosynthesis is crucial for reliably predicting carbon-nitrogen cycle coupling in Earth System Models (ESMs). Most ESMs assume positive correlations amongst soil nitrogen supply, leaf nitrogen content, and photosynthetic capacity. However, leaf photosynthetic nitrogen demand may influence the leaf nitrogen response to soil nitrogen supply; thus, responses to nitrogen supply are expected to be the largest in environments where demand is the greatest. Using a nutrient addition experiment replicated across 26 sites spanning four continents, we demonstrated that climate variables were stronger predictors of leaf nitrogen content than soil nutrient supply. Leaf nitrogen increased more strongly with soil nitrogen supply in regions with the highest theoretical leaf nitrogen demand, increasing more in colder and drier environments than warmer and wetter environments. Thus, leaf nitrogen responses to nitrogen supply are primarily influenced by climatic gradients in photosynthetic nitrogen demand, an insight that could improve ESM predictions.},
}

*Nitrogen/metabolism
*Plant Leaves/metabolism
*Soil/chemistry
*Photosynthesis
Climate

@article {pmid39814810,
year = {2025},
author = {Santos, RO and White, M and James, WR and Viadero, NM and Massie, JA and Boucek, RE and Rehage, JS},
title = {Cause and consequences of Common Snook (Centropomus undecimalis) space use specialization in a subtropical riverscape.},
journal = {Scientific reports},
volume = {15},
number = {1},
pages = {2004},
pmid = {39814810},
issn = {2045-2322},
support = {W912HZ-12-2-0015//U.S. Army Corps of Engineers/ ; DEB-1237517//National Science Foundation through the FCE Long-term Ecological Research Program/ ; },
mesh = {Animals ; *Rivers ; *Ecosystem ; *Seasons ; Climate Change ; Population Dynamics ; Hydrology ; },
abstract = {Variability in space use among conspecifics can emerge from foraging strategies that track available resources, especially in riverscapes that promote high synchrony between prey pulses and consumers. Projected changes in riverscape hydrological regimes due to water management and climate change accentuate the need to understand the natural variability in animal space use and its implications for population dynamics and ecosystem function. Here, we used long-term tracking of Common Snook (Centropomus undecimalis) movement and trophic dynamics in the Shark River, Everglades National Park from 2012 to 2023 to test how specialization in the space use of individuals (i.e., Eadj) changes seasonally, how it is influenced by yearly hydrological conditions, and its relationship to the between individual trophic niche. Snook exhibited seasonal variability in space use, with maximum individual specialization (high dissimilarity) in the wet season. The degree of individual specialization increased over the years in association with greater marsh flooding duration, which produced important subsidies. Also, there were threshold responses of individual space use specialization as a function of floodplain conditions. Greater specialization in space use results in a decrease in snook trophic niche size. These results show how hydrological regimes in riverscapes influence individual specialization of resource use (both space and prey), providing insight into how forecasted hydroclimatic scenarios may shape habitat selection processes and the trophic dynamics of mobile consumers.},
}

Animals
*Rivers
*Ecosystem
*Seasons
Climate Change
Population Dynamics
Hydrology

@article {pmid39811448,
year = {2024},
author = {Teixeira, MB and Soares, AO and Lopes, DH and Lamelas-Lopez, L and Borges, PAV and Mota, JA and Simões, N},
title = {Long-term monitoring data on Popilliajaponica (Newman, 1838) (Coleoptera, Rutelidae) across the Azorean Islands.},
journal = {Biodiversity data journal},
volume = {12},
number = {},
pages = {e138989},
pmid = {39811448},
issn = {1314-2828},
abstract = {BACKGROUND: The Japanese Beetle, Popilliajaponica Newman, 1838 (Coleoptera, Rutelidae), is a univoltine agricultural pest that poses a serious threat to various agricultural crops. For more than 16 years, the Azorean official authorities have implemented a Long-Term Ecological Research (LTER) programme that is crucial for understanding the dynamics of insect pests, such as the Japanese Beetle, and their impacts on agricultural ecosystems. The significance of this long-term monitoring extends beyond understanding the pest's life cycle. By sharing this long-term monitoring data with the scientific community, we hope it allows for a more comprehensive assessment of P.japonica success and spread, enabling a deeper understanding of how this pest interacts and correlates with biotic and abiotic factors to uncover patterns and trends crucial for effective pest management.In the Azores Archipelago, P.japonica adults emerge from pupae at the end of May and peak in density by early July, persisting until October. Larvae develop through three instars, with the third instar grub pupating by early May. This lifecycle highlights the pest population's seasonal activity, including the timing of emergence, adult stages and larval stages. It reveals when and for how long the pest is active in each of its life stages and provides critical information for pest management strategies. Worldwide, this pest can cause damage to 414 plant species across 94 families, underscoring the potential for elevated crop damage. This information is invaluable for developing targeted intervention strategies and mitigating economic losses caused by P.japonica infestations. Therefore, establishing and maintaining long-term programmes for monitoring P.japonica populations are essential for scientific understanding and practical pest management efforts in the Azores Archipelago.

NEW INFORMATION: The data presented here report the officials' records of a 16-year (from 2008 to 2023) long-term monitoring programme on P.japonica in the Azores Archipelago, undertaken by the Secretaria Regional da Agricultura e Alimentação operational services. Based on the last checklist of Azorean arthropods, the species is recorded for the first time for the Corvo, Graciosa and São Jorge Islands.},
}

@article {pmid39789709,
year = {2025},
author = {Guo, T and Marquart-Pyatt, S and Ulbrich, T and Doll, JE and Wilke, B and Robertson, GP},
title = {Assessing the impacts of stakeholder involvement in long-term agricultural experiments via a case study in the upper US Midwest.},
journal = {Journal of environmental quality},
volume = {},
number = {},
pages = {},
doi = {10.1002/jeq2.20676},
pmid = {39789709},
issn = {1537-2537},
support = {//USDA Long-Term Agroecosystem Research Program/ ; DEB1832042//NSF Long-term Ecological Research Program/ ; //Michigan State University AgBioResearch/ ; },
abstract = {Agricultural researchers are increasingly encouraged to engage with stakeholders to improve the usefulness of their projects, but iterative research on the design and assessment of stakeholder engagement is scarce. The USDA Long-Term Agroecosystem Research (LTAR) Network recognizes the importance of effective engagement in increasing the utility of information and technologies for future agriculture. Diverse stakeholders and researchers at the Kellogg Biological Station (KBS) LTAR site co-designed the KBS LTAR Aspirational Cropping System Experiment, a process that provides a testing ground and interdisciplinary collaborations to develop theory-driven assessment protocols for continuous stakeholder engagement. Informed by prior work, we designed an assessment protocol that aims to measure participant preferences, experiences, and perceived benefits at various stages of this long-term project. Two online surveys were conducted in 2021 and 2022 among participants of LTAR engagement events at KBS, using a pre-post design, resulting in 125 total responses. Survey respondents had positive perceptions of the collaboratively designed research experiment. They had a strong expectation that the research would generate conservation and environmental advances while also informing policy and programs. Respondents also indicated a desire to network with other stakeholders. The research team noted the significant role of a long-term stakeholder engagement specialist in inviting participants from diverse backgrounds and creating an open and engaging experience. Overall, results highlight an interdisciplinary path of intentional and iterative engagement and evaluation to build a program that is adaptive and responsive to stakeholder needs.},
}

@article {pmid39739306,
year = {2024},
author = {LaMontagne, JM and Greene, DF and Holland, EP and Johnstone, JF and Schulze, M and Zimmerman, JK and Lyon, NJ and Chen, A and Miller, TEX and Nigro, KM and Snell, RS and Barton, JH and Chaudhary, VB and Cleavitt, NL and Crone, EE and Koenig, WD and Macias, D and Pearse, IS and Redmond, MD},
title = {Community Synchrony in Seed Production is Associated With Trait Similarity and Climate Across North America.},
journal = {Ecology letters},
volume = {27},
number = {12},
pages = {e14498},
doi = {10.1111/ele.14498},
pmid = {39739306},
issn = {1461-0248},
support = {1114804//Division of Environmental Biology/ ; 1122325//Division of Environmental Biology/ ; 1546686//Division of Environmental Biology/ ; 1636476//Division of Environmental Biology/ ; 1637685//Division of Environmental Biology/ ; 1754435//Division of Environmental Biology/ ; 1929393//Division of Environmental Biology/ ; 2025755//Division of Environmental Biology/ ; 2224776//Division of Environmental Biology/ ; RJVA-PNW-20-JV-11261932-018//USDA Forest Service, Pacific Northwest Research Station/ ; },
mesh = {*Seeds/physiology ; *Climate ; Reproduction ; North America ; Phylogeny ; Forests ; United States ; },
abstract = {Mast seeding, the synchronous and highly variable production of seed crops by perennial plants, is a population-level phenomenon and has cascading effects in ecosystems. Mast seeding studies are typically conducted at the population/species level. Much less is known about synchrony in mast seeding between species because the necessary long-term data are rarely available. To investigate synchrony between species within communities, we used long-term data from seven forest communities in the U.S. Long-Term Ecological Research (LTER) network, ranging from tropical rainforest to boreal forest. We focus on cross-species synchrony and (i) quantify synchrony in reproduction overall and within LTER sites, (ii) test for relationships between synchrony with trait and phylogenetic similarity and (iii) investigate how climate conditions at sites are related to levels of synchrony. Overall, reproductive synchrony between woody plant species was greater than expected by chance, but spanned a wide range of values between species. Based on 11 functional and reproductive traits for 103 species (plus phylogenetic relatedness), cross-species synchrony in reproduction was driven primarily by trait similarity with phylogeny being largely unimportant, and synchrony was higher in sites with greater climatic water deficit. Community-level synchrony in masting has consequences for understanding forest regeneration dynamics and consumer-resource interactions.},
}

*Seeds/physiology
*Climate
Reproduction
North America
Phylogeny
Forests
United States

@article {pmid39737888,
year = {2024},
author = {Chen, TC and Kahru, M and Landry, MR and Ohman, MD and Thompson, AR and Stukel, MR},
title = {Multi-Trophic Level Responses to Marine Heatwave Disturbances in the California Current Ecosystem.},
journal = {Ecology letters},
volume = {27},
number = {12},
pages = {e14502},
doi = {10.1111/ele.14502},
pmid = {39737888},
issn = {1461-0248},
support = {OCE-1026607//National Science Foundation/ ; OCE-1614359//National Science Foundation/ ; OCE-1637632//National Science Foundation/ ; OCE-2224726//National Science Foundation/ ; OCE-0417616//National Science Foundation/ ; },
mesh = {Animals ; *Ecosystem ; *Zooplankton/physiology ; Food Chain ; Fishes/physiology ; Phytoplankton/physiology ; California ; Biomass ; Hot Temperature ; },
abstract = {Marine heatwaves (MHWs) caused by multiple phenomena with days to months duration are increasingly common disturbances in ocean ecosystems. We investigated the impacts of MHWs on pelagic communities using spatially resolved time-series of multiple trophic levels from the Southern California Current Ecosystem. Indices of phytoplankton biomass mostly declined during MHWs because of reduced nutrient supply (excepting Prochlorococcus) and were generally more sensitive to marine heatwave intensity than duration. By contrast, mesozooplankton (as estimated by zooplankton displacement volume) were somewhat more strongly correlated with MHW duration than intensity. Zooplankton anomalies were also positively correlated with fucoxanthin (diatom) anomalies, highlighting possible bottom-up influences during MHWs. Mobile consumers (forage fish) showed more complex responses, with fish egg abundance declining during MHWs but not correlating with any MHW characteristics. Our findings provide partial evidence of how MHW characteristics can shape variable ecological responses due to the differing life spans and behaviours of different trophic levels.},
}

Animals
*Ecosystem
*Zooplankton/physiology
Food Chain
Fishes/physiology
Phytoplankton/physiology
California
Biomass
Hot Temperature

@article {pmid39737886,
year = {2024},
author = {Zammarelli, MB and Ayres, MP and Ter Hofstede, HM and Lutz, DA and Holmes, RT},
title = {Territory Sizes and Patterns of Habitat Use by Forest Birds Over Five Decades: Ideal Free or Ideal Despotic?.},
journal = {Ecology letters},
volume = {27},
number = {12},
pages = {e14525},
doi = {10.1111/ele.14525},
pmid = {39737886},
issn = {1461-0248},
support = {#0108488//National Science Foundation Long Term Research in Environmental Biology Grant/ ; #0640470//National Science Foundation Long Term Research in Environmental Biology Grant/ ; #0640732//National Science Foundation Long Term Research in Environmental Biology Grant/ ; #0717338//National Science Foundation Long Term Research in Environmental Biology Grant/ ; #1242588//National Science Foundation Long Term Research in Environmental Biology Grant/ ; #0423259//National Science Foundation Long-Term Ecological Research Grant/ ; #1114804//National Science Foundation Long-Term Ecological Research Grant/ ; #1637685//National Science Foundation Long-Term Ecological Research Grant/ ; #2224545//National Science Foundation Long-Term Ecological Research Grant/ ; #8702331//National Science Foundation Long-Term Ecological Research Grant/ ; #9211768//National Science Foundation Long-Term Ecological Research Grant/ ; #9810221//National Science Foundation Long-Term Ecological Research Grant/ ; },
mesh = {Animals ; *Songbirds/physiology ; *Forests ; *Territoriality ; *Ecosystem ; New Hampshire ; Population Density ; Population Dynamics ; Animal Distribution ; },
abstract = {Relations among territoriality, abundance and habitat suitability are fundamental to the ecology of many animal populations. Theory suggests two classes of possible responses to increasing abundance in territorial species: (1) the ideal free distribution (IFD), which predicts smaller territory sizes and decreased fitness as individuals adaptively pack into suitable habitats, and (2) the ideal despotic distribution (IDD), which predicts stable territory sizes and fitness in preferred habitats for dominant individuals and increased use of marginal habitats, reduced fitness and changes in territory sizes for subordinate individuals. We analysed the territory sizes and locations of seven migratory songbird species occupying a 10-ha plot in the Hubbard Brook Experimental Forest, New Hampshire, USA over a 52-year period. Species varied in abundance over years from twofold to 22-fold, and all species displayed clear patterns of habitat preference within the study plot. Consistent with IFD, and contrary to IDD, territory sizes decreased with local abundance for all species, irrespective of habitat preferences. There was at least a twofold variation in territory size within years. Conformity of territory size to predictions of the IFD argues for the efficacy of territorial defence in songbirds and has general consequences for population dynamics.},
}

Animals
*Songbirds/physiology
*Forests
*Territoriality
*Ecosystem
New Hampshire
Population Density
Population Dynamics
Animal Distribution

@article {pmid39703806,
year = {2024},
author = {Díaz-Delgado, R and Torrijo-Salesa, M and Ramírez González, LA and Alcaide, A and Paz Sánchez, DA and Aragonés, D and López, D and Román Maudo, I and Ruiz-Martín, J and Bustamante, J and Márquez-Ferrando, R},
title = {Long-term monitoring of woody plants of Doñana shrublands (SW Spain) from 2008 to 2023.},
journal = {Biodiversity data journal},
volume = {12},
number = {},
pages = {e139074},
pmid = {39703806},
issn = {1314-2828},
abstract = {BACKGROUND: The long-term monitoring of the plant cover of Doñana shrublands is part of a harmonised protocol for the Long-term Ecological Monitoring Programme of Natural Resources and Processes targeting Terrestrial Vegetation. The general aim of this protocol is to monitor and assess the dynamics and trends of shrubland plant communities in Doñana. For shrublands, percentage cover is recorded annually, starting in 2008, by the Doñana Long-Term Monitoring Team in one field sampling campaign per year during the flowering season (between March and May) across 21 permanent square plots (15 m x 15 m). Permanent plots were located according to stratified random sampling according to the topographic gradient defining the main shrubland species dominance in the Doñana Biological Reserve. Cover is measured using the line intercept method in three transects inside the plots of 15 m length, orientated from west to east and located at fixed points of 2.5, 7.5 and 12.5 metres on both sides of the plot. Using the line-intercept method, the coverage of each species per individual is measured with a measuring tape, recording its class age (adult or seedling) and canopy status (green or dry) as a living or dead specimen. The average plant height is recorded for every transect. This method enables the calculation of the total percentage cover per species and plant density for transects and plots, as well as the total percentage cover per class age and the total percentage cover of dry and green canopies and bare soil. The annual species richness and diversity of woody plants can also be calculated for every plot.

NEW INFORMATION: This paper presents the latest published version of the standardised dataset of percent cover per woody plant species of Doñana long-term monitoring plots available at GBIF.org.},
}

@article {pmid39665135,
year = {2024},
author = {Nigro, KM and Barton, JH and Macias, D and Chaudhary, VB and Pearse, IS and Bell, DM and Chen, A and Cleavitt, NL and Crone, EE and Greene, DF and Holland, EP and Johnstone, JF and Koenig, WD and Lyon, NJ and Miller, TEX and Schulze, M and Snell, RS and Zimmerman, JK and Knops, JMH and McNulty, S and Parmenter, RR and Winterstein, MA and Zlotin, RI and LaMontagne, JM and Redmond, MD},
title = {Co-mast: Harmonized seed production data for woody plants across US long-term research sites.},
journal = {Ecology},
volume = {},
number = {},
pages = {e4463},
doi = {10.1002/ecy.4463},
pmid = {39665135},
issn = {1939-9170},
support = {RJVA-PNW-20-JV-11261932-018//Pacific Northwest Research Station, USDA Forest Service/ ; 1929393//National Science Foundation/ ; DEB-1114804//National Science Foundation/ ; DEB-1122325//National Science Foundation/ ; DEB-1546686//National Science Foundation/ ; DEB-1636476//National Science Foundation/ ; DEB-1637685//National Science Foundation/ ; DEB-1754435//National Science Foundation/ ; DEB-2025755//National Science Foundation/ ; DEB-2224776//National Science Foundation/ ; },
abstract = {Plants display a range of temporal patterns of inter-annual reproduction, from relatively constant seed production to "mast seeding," the synchronized and highly variable interannual seed production of plants within a population. Previous efforts have compiled global records of seed production in long-lived plants to gain insight into seed production, forest and animal population dynamics, and the effects of global change on masting. Existing datasets focus on seed production dynamics at the population scale but are limited in their ability to examine community-level mast seeding dynamics across different plant species at the continental scale. We harmonized decades of plant reproduction data for 141 woody plant species across nine Long-Term Ecological Research (LTER) or long-term ecological monitoring sites from a wide range of habitats across the United States. Plant reproduction data are reported annually between 1957 and 2021 and based on either seed traps or seed and/or cone counts on individual trees. A wide range of woody plant species including trees, shrubs, and lianas are represented within sites allowing for direct community-level comparisons among species. We share code for filtering of data that enables the comparison of plot and individual tree data across sites. For each species, we compiled relevant life history attributes (e.g., seed mass, dispersal syndrome, seed longevity, sexual system) that may serve as important predictors of mast seeding in future analyses. To aid in phylogenetically informed analyses, we also share a phylogeny and phylogenetic distance matrix for all species in the dataset. These data can be used to investigate continent-scale ecological properties of seed production, including individual and population variability, synchrony within and across species, and how these properties of seed production vary in relation to plant species traits and environmental conditions. In addition, these data can be used to assess how annual variability in seed production is associated with climate conditions and how that varies across populations, species, and regions. The dataset is released under a CC0 1.0 Universal public domain license.},
}

@article {pmid39664717,
year = {2024},
author = {Baker, KS and Millerand, F},
title = {The Incremental Growth of Data Infrastructure in Ecology (1980-2020).},
journal = {Ecology and evolution},
volume = {14},
number = {12},
pages = {e70444},
pmid = {39664717},
issn = {2045-7758},
abstract = {After decades of growth, a research community's network information system and data repository were transformed to become a national data management office and a major element of data infrastructure for ecology and the environmental sciences. Developing functional data infrastructures is key to the support of ongoing Open Science and Open Data efforts. This example of data infrastructure growth contrasts with the top-down development typical of many digital initiatives. The trajectory of this network information system evolved within a collaborative, long-term ecological research community. This particular community is funded to conduct ecological research while collective data management is also carried out across its geographically dispersed study sites. From this longitudinal ethnography, we describe an Incremental Growth Model that includes a sequence of six relatively stable phases where each phase is initiated by a rapid response to a major pivotal event. Exploring these phases and the roles of data workers provides insight into major characteristics of digital growth. Further, a transformation in assumptions about data management is reported for each phase. Investigating the growth of a community information system over four decades as it becomes data infrastructure reveals details of its social, technical, and institutional dynamics. In addition to addressing how digital data infrastructure characteristics change, this study also considers when the growth of data infrastructure begins.},
}

@article {pmid39621910,
year = {2024},
author = {Alfaro-Sánchez, R and Richardson, AD and Smith, SL and Johnstone, JF and Turetsky, MR and Cumming, SG and Le Moine, JM and Baltzer, JL},
title = {Permafrost instability negates the positive impact of warming temperatures on boreal radial growth.},
journal = {Proceedings of the National Academy of Sciences of the United States of America},
volume = {121},
number = {50},
pages = {e2411721121},
doi = {10.1073/pnas.2411721121},
pmid = {39621910},
issn = {1091-6490},
support = {15879//Aurora Research Institute (ARI)/ ; permafrost monitoring in the Mackenzie River Valley//Canadian Government | Natural Resources Canada (NRCan)/ ; MZ2021//María Zambrano program/ ; Small Research 2021 - SR21/1291//British Ecological Society (BES)/ ; Environmental Studies Research Fund and Cumulative Impacts Monitoring Program (Project 170)//Environment and Natural Resources, Northwest Territories (ENR, NWT)/ ; Discovery Grant support//Canadian Government | NSERC | RES'EAU-WaterNET/ ; Bonanza Creek LTER DEB-2224776//National Science Foundation (NSF)/ ; },
mesh = {*Permafrost ; *Trees/growth & development ; Temperature ; Taiga ; Global Warming ; Climate Change ; Forests ; },
abstract = {Climate warming can alleviate temperature and nutrient constraints on tree growth in boreal regions, potentially enhancing boreal productivity. However, in permafrost environments, warming also disrupts the physical foundation on which trees grow, leading to leaning trees or "drunken" forests. Tree leaning might reduce radial growth, undermining potential benefits of warming. Here, we found widespread radial growth reductions in southern latitude boreal forests since the 1980s. At mid latitudes, radial growth increased from ~1980 to ~2000 but showed recent signs of decline afterward. Increased growth was evident since the 1980 s at higher latitudes, where radial growth appears to be temperature limited. However, recent changes in permafrost stability, and the associated increased frequency of tree leaning events, emerged as a significant stressor, leading to reduced radial growth in boreal trees at the highest latitudes, where permafrost is extensive. We showed that trees growing in unstable permafrost sites allocated more nonstructural carbohydrate reserves to offset leaning which compromised radial growth and potential carbon uptake benefits of warming. This higher allocation of resources in drunken trees is needed to build the high-density reaction wood, rich in lignin, that is required to maintain a vertical position. With continued climate warming, we anticipate widespread reductions in radial growth in boreal forests, leading to lower carbon sequestration. These findings enhance our understanding of how climate warming and indirect effects, such as ground instability caused by warming permafrost, will affect boreal forest productivity in the future.},
}

*Permafrost
*Trees/growth & development
Temperature
Taiga
Global Warming
Climate Change
Forests

@article {pmid39579891,
year = {2024},
author = {Ulloa-Cedamanos, F and Probst, JL and Probst, A},
title = {Medium term hydrochemical and CO2 responses to anthropogenic and environmental changes in karst headwater streams.},
journal = {The Science of the total environment},
volume = {},
number = {},
pages = {177614},
doi = {10.1016/j.scitotenv.2024.177614},
pmid = {39579891},
issn = {1879-1026},
abstract = {This study investigates the intricate effects of lithology, temperature, discharge, and land use changes on headwater stream chemistry by analysing two decades of hydrochemical data from twenty karst headwater catchments in the Garonne River basin, France. Focused on the Pyrenees and the lowland (LM) and upland (UM) regions of the Massif Central, this study identified significant regional variations and commonalities in water chemistry. The headwater streams were clustered based on their hydrological and hydrochemical profiles, revealing strong similarities between upland sites, i.e. UM and Pyrenees, despite their geographical distance. The findings revealed a predominance of water driven by calcite dissolution, with specific influences from minor lithologies. Seasonal variations in water chemistry were primarily driven by hydrological conditions. Trend analyses highlighted increased pCO2 concentration in both the Pyrenees and UM, linked to higher forest density and agricultural activities, respectively. In contrast, LM exhibited increasing Ca[2+] and HCO3[-] concentrations alongside decreasing trends in pCO2 and discharge, and increased nitrate concentration. While overall water temperatures increase, only a few sites exhibited significant warming trends, consistent with similar studies in the region and worldwide. These findings underscore the complex interplay between land use changes and hydrochemical dynamics in karst headwaters. They reveal that rising pCO2 concentration trends in upland regions are driven by reforestation and agricultural practices, which have significant implications in CO2 emissions, and consequently for regional and global carbon budgets and carbon-related policies. In lowland areas, declining water resources and increasing ion concentrations highlight potential challenges for water management, particularly in sensitive karst catchments. This study provides a baseline for understanding how karst headwaters respond to environmental changes. Expanding this research to other karst systems worldwide, under different climates, would help validate and model these findings, and improve our understanding of the global carbon cycle.},
}

@article {pmid39567077,
year = {2024},
author = {Roche, KM and Church, IN and Sterling, AR and Rynearson, TA and Bertin, MJ and Kim, AM and Kirk, RD and Jenkins, BD},
title = {Connectivity of toxigenic Pseudo-nitzschia species assemblages between the Northeast U.S. continental shelf and an adjacent estuary.},
journal = {Harmful algae},
volume = {139},
number = {},
pages = {102738},
doi = {10.1016/j.hal.2024.102738},
pmid = {39567077},
issn = {1878-1470},
mesh = {*Estuaries ; *Diatoms ; Harmful Algal Bloom ; Kainic Acid/analogs & derivatives/analysis ; Seasons ; Marine Toxins/analysis ; Rhode Island ; New England ; },
abstract = {Pseudo-nitzschia harmful algal blooms have recently caused elevated domoic acid in coastal environments of the Northeast United States. In 2017, the toxigenic species P. australis was observed in Narragansett Bay, Rhode Island, a temperate estuarine ecosystem, for the first time since 2009 when DNA monitoring for Pseudo-nitzschia species began. This highly toxic species likely contributed to toxin-related shellfish harvest closures and is hypothesized to have been introduced by an offshore source. Little is known about offshore Pseudo-nitzschia spp. populations in the Northeast Continental Shelf marine ecosystem or how often toxigenic species enter Narragansett Bay through physical processes. Here, we collected filtered biomass samples from multiple time series sites within Narragansett Bay and along the Northeast U.S. Shelf Long-Term Ecological Research transect in winter and summer to investigate the frequency and seasonality of potential Pseudo-nitzschia spp. inflow from the continental shelf to the estuary. Species were taxonomically identified using DNA sequencing of the ITS1 region and domoic acid concentrations were quantified by liquid chromatography with tandem mass spectrometry and multiple reaction monitoring. During six years of sampling, Pseudo-nitzschia species assemblages were more similar between Narragansett Bay and the Northeast shelf in winter than summer, suggesting greater ecosystem connectivity in winter. These winter assemblages were often accompanied by higher domoic acid. Several Pseudo-nitzschia species co-occurred most often with domoic acid and were likely responsible for toxin production in this region, including P. pungens var. pungens, P. multiseries, P. calliantha, P. plurisecta, P. australis, and P. fraudulenta. Domoic acid was detected during periods of relatively low macronutrient concentrations in both seasons, warmer sea surface temperatures in winter, and colder temperatures in summer within this dataset. This study represents some of the first domoic acid measurements on the offshore Northeast U.S. Continental Shelf, a region that supplies water to other coastal environments and could seed future harmful algal blooms. The elevated domoic acid and frequency of hypothesized inflow of toxigenic Pseudo-nitzschia spp. from the Northeast continental shelf to Narragansett Bay in winter indicate the need to monitor coastal and offshore environments for toxins and harmful algal bloom taxa during colder months.},
}

*Estuaries
*Diatoms
Harmful Algal Bloom
Kainic Acid/analogs & derivatives/analysis
Seasons
Marine Toxins/analysis
Rhode Island
New England

@article {pmid39563701,
year = {2024},
author = {Liu, X and Yi, S and Wu, P and Wang, N and Li, Q},
title = {Why Are Widely Distributed Species Widely Distributed? Understanding From a Quantified Investment Acquisition Strategy.},
journal = {Ecology and evolution},
volume = {14},
number = {11},
pages = {e70581},
pmid = {39563701},
issn = {2045-7758},
abstract = {Research on plant functional traits have advanced our understanding of plant investment acquisition strategies. However, it is still unknown how a plant investment acquisition strategy varies or how the relative position of plants on the leaf economic spectrum changes across different habitats. Therefore, we conducted the field experiments at two long-term ecological research sites in Shandong and Xinjiang, China, in August 2023. Twenty-two common species in both sites and four endemics in each site were selected for leaf gas exchange traits, leaf growth traits, and leaf nutrient trait measurements. We used two different methods to quantify the leaf economic spectrum, PCA quantification and functional area quantification. We found that the 22 common species had a significantly faster investment acquisition strategy than local endemics on the leaf economic spectrum. Besides, the plasticity of the 22 common species was not coupled with the plasticity of their investment acquisition strategy. According to our results, we quantified and constructed the leaf economic spectrum of the 30 woody plant species in Shandong and Xinjiang and discussed that high plasticity and fast investment acquisition strategy may be an ecological adaptation and distribution strategy for widely distributed species.},
}

@article {pmid39468868,
year = {2024},
author = {Morton, JP and Hensel, MJS and DeLaMater, DS and Angelini, C and Atkins, RL and Prince, KD and Williams, SL and Boyd, AD and Parsons, J and Resetarits, EJ and Smith, CS and Valdez, S and Monnet, E and Farhan, R and Mobilian, C and Renzi, J and Smith, D and Craft, C and Byers, JE and Alber, M and Pennings, SC and Silliman, BR},
title = {Mesopredator release moderates trophic control of plant biomass in a Georgia salt marsh.},
journal = {Ecology},
volume = {},
number = {},
pages = {e4452},
doi = {10.1002/ecy.4452},
pmid = {39468868},
issn = {1939-9170},
support = {OCE-1237140//Georgia Coastal Ecosystems Long-Term Ecological Research program/ ; OCE-1832178//Georgia Coastal Ecosystems Long-Term Ecological Research program/ ; //University of Georgia Marine Institute/ ; //National Science Foundation/ ; },
abstract = {Predators regulate communities through top-down control in many ecosystems. Because most studies of top-down control last less than a year and focus on only a subset of the community, they may miss predator effects that manifest at longer timescales or across whole food webs. In southeastern US salt marshes, short-term and small-scale experiments indicate that nektonic predators (e.g., blue crab, fish, terrapins) facilitate the foundational grass, Spartina alterniflora, by consuming herbivorous snails and crabs. To test both how nekton affect marsh processes when the entire animal community is present, and how prior results scale over time, we conducted a 3-year nekton exclusion experiment in a Georgia salt marsh using replicated 19.6 m[2] plots. Our nekton exclusions increased densities of plant-grazing snails and juvenile deposit-feeding fiddler crab and, in Year 2, reduced predation on tethered juvenile snails, indicating that nektonic predators control these key macroinvertebrates. However, in Year 3, densities of mesopredatory benthic mud crabs increased threefold in nekton exclusions, erasing the tethered snails' predation refuge. Nekton exclusion had no effect on Spartina biomass, likely because the observed mesopredator release suppressed grazing snail densities and elevated densities of fiddler crabs, whose burrowing alleviates soil stresses. Structural equation modeling supported the hypotheses that nektonic predators and mesopredators control invertebrate communities, with nektonic predators having stronger total effects on Spartina than mud crabs by controlling densities of species that both suppress (grazers) and facilitate (fiddler crabs) plant growth. These findings highlight that salt marshes can be resilient to multiyear reductions in nektonic predators if mesopredators are present and that multiple pathways of trophic control manifest in different ways over time to mediate community dynamics. These results highlight that larger scale and longer-term experiments can illuminate community dynamics not previously understood, even in well-studied ecosystems such as salt marshes.},
}

@article {pmid39460672,
year = {2024},
author = {Reed, WJ and Westmoreland, AJ and Suding, KN and Doak, DF and Bowman, WD and Emery, NC},
title = {Temporal variability and predictability predict alpine plant community composition and distribution patterns.},
journal = {Ecology},
volume = {},
number = {},
pages = {e4450},
doi = {10.1002/ecy.4450},
pmid = {39460672},
issn = {1939-9170},
support = {DEB-1553053//National Science Foundation/ ; DEB-1637686//National Science Foundation/ ; DEB-2224439//National Science Foundation/ ; },
abstract = {One of the most reliable features of natural systems is that they change through time. Theory predicts that temporally fluctuating conditions shape community composition, species distribution patterns, and life history variation, yet features of temporal variability are rarely incorporated into studies of species-environment associations. In this study, we evaluated how two components of temporal environmental variation-variability and predictability-impact plant community composition and species distribution patterns in the alpine tundra of the Southern Rocky Mountains in Colorado (USA). Using the Sensor Network Array at the Niwot Ridge Long-Term Ecological Research site, we used in situ, high-resolution temporal measurements of soil moisture and temperature from 13 locations ("nodes") distributed throughout an alpine catchment to characterize the annual mean, variability, and predictability in these variables in each of four consecutive years. We combined these data with annual vegetation surveys at each node to evaluate whether variability over short (within-day) and seasonal (2- to 4-month) timescales could predict patterns in plant community composition, species distributions, and species abundances better than models that considered average annual conditions alone. We found that metrics for variability and predictability in soil moisture and soil temperature, at both daily and seasonal timescales, improved our ability to explain spatial variation in alpine plant community composition. Daily variability in soil moisture and temperature, along with seasonal predictability in soil moisture, was particularly important in predicting community composition and species occurrences. These results indicate that the magnitude and patterns of fluctuations in soil moisture and temperature are important predictors of community composition and plant distribution patterns in alpine plant communities. More broadly, these results highlight that components of temporal change provide important niche axes that can partition species with different growth and life history strategies along environmental gradients in heterogeneous landscapes.},
}

@article {pmid39450241,
year = {2024},
author = {Wurtzer, S and Duvivier, M and Accrombessi, H and Levert, M and Richard, E and Moulin, L},
title = {Assessing RNA integrity by digital RT-PCR: Influence of extraction, storage, and matrices.},
journal = {Biology methods & protocols},
volume = {9},
number = {1},
pages = {bpae053},
pmid = {39450241},
issn = {2396-8923},
abstract = {The development of high-throughput sequencing has greatly improved our knowledge of microbial diversity in aquatic environments and its evolution in highly diverse ecosystems. Relevant microbial diversity description based on high-throughput sequencing relies on the good quality of the nucleic acid recovered. Indeed, long genetic fragments are more informative for identifying mutation combinations that characterize variants or species in complex samples. This study describes a new analytical method based on digital Polymerase Chain Reaction (PCR) partitioning technology for assessing the fragmentation of nucleic acid and more specifically viral RNA. This method allows us to overcome limits associated with hydrolysis probe-based assay by focusing on the distance between different amplicons, and not, as usual, on the size of amplicons. RNA integrity can thus be determined as a new fragmentation index, the so-called Fragment size 50. The application of this method has provided information on issues that are inherent in environmental analyses, such as the storage impact of raw samples or extracted RNA, extraction methods, and the nature of the sample on the integrity of viral RNA. Finally, the estimation of fragment size by digital PCR (dPCR) showed a very strong similarity with the fragment size sequenced using Oxford Nanopore Technology. In addition to enabling objective improvements in analytical methods, this approach could become a systematic quality control prior to any long-read sequencing, avoiding insufficiently productive sequencing runs or biases in the representativeness of sequenced fragments.},
}

@article {pmid39446706,
year = {2024},
author = {Shinfuku, MS and Domeignoz-Horta, LA and Choudoir, MJ and Frey, SD and Mitchell, MF and Ranjan, R and DeAngelis, KM},
title = {Seasonal effects of long-term warming on ecosystem function and bacterial diversity.},
journal = {PloS one},
volume = {19},
number = {10},
pages = {e0311364},
doi = {10.1371/journal.pone.0311364},
pmid = {39446706},
issn = {1932-6203},
mesh = {*Seasons ; *Soil Microbiology ; *Biodiversity ; *Bacteria/classification/genetics ; *Ecosystem ; *Climate Change ; Soil/chemistry ; Global Warming ; },
abstract = {Across biomes, soil biodiversity promotes ecosystem functions. However, whether this relationship will be maintained within ecosystems under climate change is uncertain. Here, using two long-term soil warming experiments, we investigated how warming affects the relationship between ecosystem functions and bacterial diversity across seasons, soil horizons, and warming duration. Soils were sampled from these warming experiments located at the Harvard Forest Long-Term Ecological Research (LTER) site, where soils had been heated +5°C above ambient for 13 or 28 years at the time of sampling. We assessed seven measurements representative of different ecosystem functions and nutrient pools. We also surveyed bacterial community diversity. We found that ecosystem function was significantly affected by season, with autumn samples having a higher intercept than summer samples in our model, suggesting a higher overall baseline of ecosystem function in the fall. The effect of warming on bacterial diversity was similarly affected by season, where warming in the summer was associated with decreased bacterial evenness in the organic horizon. Despite the decreased bacterial evenness in the warmed plots, we found that the relationship between ecosystem function and bacterial diversity was unaffected by warming or warming duration. Our findings highlight that season is a consistent driver of ecosystem function as well as a modulator of climate change effects on bacterial community evenness.},
}

*Seasons
*Soil Microbiology
*Biodiversity
*Bacteria/classification/genetics
*Ecosystem
*Climate Change
Soil/chemistry
Global Warming

@article {pmid39414563,
year = {2024},
author = {Robertson, GP and Wilke, B and Ulbrich, T and Haddad, NM and Hamilton, SK and Baas, DG and Basso, B and Blesh, J and Boring, TJ and Campbell, L and Cassida, KA and Charles, C and Chen, J and Doll, JE and Guo, T and Kravchenko, AN and Landis, DA and Marquart-Pyatt, ST and Singh, MP and Sprunger, CD and Stegink, J},
title = {The LTAR Cropland Common Experiment at the Kellogg Biological Station.},
journal = {Journal of environmental quality},
volume = {},
number = {},
pages = {},
doi = {10.1002/jeq2.20638},
pmid = {39414563},
issn = {1537-2537},
support = {DEB22224712//USDA-ARS, Long-Term Agroecosystem Research (LTAR) Program/ ; //U.S. National Science Foundation/ ; DEB 2224712//Long-Term Ecological Research (LTER) Program/ ; //AgBioResearch, Michigan State University/ ; },
abstract = {The Kellogg Biological Station Long-term Agroecosystem Research site (KBS LTAR) joined the national LTAR Network in 2015 to represent a northeast portion of the North Central Region, extending across 76,000 km[2] of southern Michigan and northern Indiana. Regional cropping systems are dominated by corn (Zea mays)-soybean (Glycine max) rotations managed with conventional tillage, industry-average rates of fertilizer and pesticide inputs uniformly applied, few cover crops, and little animal integration. In 2020, KBS LTAR initiated the Aspirational Cropping System Experiment as part of the LTAR Common Experiment, a co-production model wherein stakeholders and researchers collaborate to advance transformative change in agriculture. The Aspirational (ASP) cropping system treatment, designed by a team of agronomists, farmers, scientists, and other stakeholders, is a five-crop rotation of corn, soybean, winter wheat (Triticum aestivum), winter canola (Brassicus napus), and a diverse forage mix. All phases are managed with continuous no-till, variable rate fertilizer inputs, and integrated pest management to provide benefits related to economic returns, water quality, greenhouse gas mitigation, soil health, biodiversity, and social well-being. Cover crops follow corn and winter wheat, with fall-planted crops in the rotation providing winter cover in other years. The experiment is replicated with all rotation phases at both the plot and field scales and with perennial prairie strips in consistently low-producing areas of ASP fields. The prevailing practice (or Business as usual [BAU]) treatment mirrors regional prevailing practices as revealed by farmer surveys. Stakeholders and researchers evaluate the success of the ASP and BAU systems annually and implement management changes on a 5-year cycle.},
}

@article {pmid39403722,
year = {2024},
author = {Bryant, RL and Kothari, S and Cavender-Bares, J and Curran, SJ and Grossman, JJ and Hobbie, SE and Nash, C and Neumiller, GC and See, CR},
title = {Independent effects of tree diversity on aboveground and soil carbon pools after six years of experimental afforestation.},
journal = {Ecological applications : a publication of the Ecological Society of America},
volume = {},
number = {},
pages = {e3042},
doi = {10.1002/eap.3042},
pmid = {39403722},
issn = {1051-0761},
support = {MIN-73-015 accession no. 1009904//Minnesota Agricultural Experiment Station/ ; 1831944//Division of Environmental Biology/ ; 2024-67011-43012//United States Department of Agriculture National Institute of Food and Agriculture/ ; },
abstract = {Planting diverse forests has been proposed as a means to increase long-term carbon (C) sequestration while providing many co-benefits. Positive tree diversity-productivity relationships are well established, suggesting more diverse forests will lead to greater aboveground C sequestration. However, the effects of tree diversity on belowground C storage have the potential to either complement or offset aboveground gains, especially during early stages of afforestation when potential exists for large losses in soil C due to soil decomposition. Thus, experimental tests of the effects of planted tree biodiversity on changes in whole-ecosystem C balance are needed. Here, we present changes in above- and belowground C pools 6 years after the initiation of the Forests and Biodiversity experiment (FAB1), consisting of high-density plots of one, two, five, or 12 tree species planted in a common garden. The trees included a diverse range of native species, including both needle-leaf conifer and broadleaf angiosperm species, and both ectomycorrhizal and arbuscular mycorrhizal species. We quantified the effects of species richness, phylogenetic diversity, and functional diversity on aboveground woody C, as well as on mineral soil C accumulation, fine root C, and soil aggregation. Surprisingly, changes in aboveground woody C pools were uncorrelated to changes in mineral soil C pools, suggesting that variation in soil C accumulation was not driven by the quantity of plant litter inputs. Aboveground woody C accumulation was strongly driven by species and functional identity; however, plots with higher species richness and functional diversity accumulated more C in aboveground wood than expected based on monocultures. We also found weak but significant effects of tree species richness, identity, and mycorrhizal type on soil C accumulation. To assess the role of the microbial community in mediating these effects, we further compared changes in soil C pools to phospholipid fatty acid (PLFA) profiles. Soil C pools and accumulation were more strongly correlated with specific microbial clades than with total microbial biomass or plant diversity. Our results highlight rapidly emerging and microbially mediated effects of tree biodiversity on soil C storage in the early years of afforestation that are independent of gains in aboveground woody biomass.},
}

@article {pmid39384550,
year = {2024},
author = {Dhaliwal, JK and Panday, D and Robertson, GP and Saha, D},
title = {Machine learning reveals dynamic controls of soil nitrous oxide emissions from diverse long-term cropping systems.},
journal = {Journal of environmental quality},
volume = {},
number = {},
pages = {},
doi = {10.1002/jeq2.20637},
pmid = {39384550},
issn = {1537-2537},
support = {DEB 2224712//NSF Long-term Ecological Research Program/ ; 2021-67019-34247//National Institute of Food and Agriculture/ ; //USDA Long-Term Agroecosystem Research Program/ ; },
abstract = {Soil nitrous oxide (N2O) emissions exhibit high variability in intensively managed cropping systems, which challenges our ability to understand their complex interactions with controlling factors. We leveraged 17 years (2003-2019) of measurements at the Kellogg Biological Station Long-Term Ecological Research (LTER)/Long-Term Agroecosystem Research (LTAR) site to better understand the controls of N2O emissions in four corn-soybean-winter wheat rotations employing conventional, no-till, reduced input, and biologically based/organic inputs. We used a random forest machine learning model to predict daily N2O fluxes, trained separately for each system with 70% of observations, using variables such as crop species, daily air temperature, cumulative 2-day precipitation, water-filled pore space, and soil nitrate and ammonium concentrations. The model explained 29%-42% of daily N2O flux variability in the test data, with greater predictability for the corn phase in each system. The long-term rotations showed different controlling factors and threshold conditions influencing N2O emissions. In the conventional system, the model identified ammonium (>15 kg N ha[-1]) and daily air temperature (>23°C) as the most influential variables; in the no-till system, climate variables such as precipitation and air temperature were important variables. In low-input and organic systems, where red clover (Trifolium repens L.; before corn) and cereal rye (Secale cereale L.; before soybean) cover crops were integrated, nitrate was the predominant predictor of N2O emissions, followed by precipitation and air temperature. In low-input and biologically based systems, red clover residues increased soil nitrogen availability to influence N2O emissions. Long-term data facilitated machine learning for predicting N2O emissions in response to differential controls and threshold responses to management, environmental, and biogeochemical drivers.},
}

@article {pmid39354751,
year = {2024},
author = {Granzotti, RV and Cassemiro, FAS and Agostinho, AA and Bini, LM},
title = {Drivers of interspecific synchrony and diversity-stability relationships in floodplain fish communities.},
journal = {The Journal of animal ecology},
volume = {},
number = {},
pages = {},
doi = {10.1111/1365-2656.14190},
pmid = {39354751},
issn = {1365-2656},
support = {465610/2014-5//Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)/ ; //Fundação de Amparo à Pesquisa do Estado de Goiás (FAPEG)/ ; //Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)/ ; 465610/2014-5//Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)/ ; 380640/2022-8//Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)/ ; 308974/2020-4//Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)/ ; 312549/2021-0//Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)/ ; },
abstract = {Diversity and interspecific synchrony are among the main drivers behind the temporal stability of community abundance. Diversity can increase stability through the portfolio effect, while higher synchrony generally decreases stability. In turn, species interactions and similar responses to environmental variation are considered the main factors underlying the strength of interspecific synchrony, despite the challenges in determining their relative roles. The analysis of the relationship between interspecific synchrony and the trait (or phylogenetic) distance between species can increase the robustness of inferences about these factors. Here, we used pairwise interspecific and community-wide analyses to investigate, respectively, the drivers of interspecific synchrony and the influence of trait and phylogenetic diversity on the stability of fish communities. For that, we used 18 years of fish abundance data from the Upper Paraná River floodplain. At the interspecific level, we used quantile regressions to test within-guild relationships between interspecific synchrony and trait and phylogenetic distance between species. At the community level, we tested the relationships between community-wide synchrony, stability, and (trait and phylogenetic) diversity. We found that interspecific synchrony decreased with trait and phylogenetic distances. In the community-level analysis, we found that more synchronous fish communities were less stable, but the relationship between diversity and stability was in general weak. At the interspecific level, our study highlights the role of similar responses to environmental variation in driving species' temporal dynamics. At the community level, the strength of the relationships between trait or phylogenetic diversity and community stability depended on the feeding guild. On the other hand, we found strong relationships between synchrony and stability. These results suggest that increased synchrony levels in response to regional environmental changes could decrease the stability of fish communities in this floodplain.},
}

@article {pmid39282773,
year = {2024},
author = {McGraw, KJ and Hammond, R and Kraberger, S and Varsani, A},
title = {Variation in Plumage Coloration of Rosy-Faced Lovebirds (Agapornis roseicollis): Links to Sex, Age, Nutritional Condition, Viral Infection, and Habitat Urbanization.},
journal = {Journal of experimental zoology. Part A, Ecological and integrative physiology},
volume = {},
number = {},
pages = {},
doi = {10.1002/jez.2867},
pmid = {39282773},
issn = {2471-5646},
support = {//This work was financially supported by the National Science Foundation (DEB-2224662; Central Arizona-Phoenix Long-Term Ecological Research Program, CAP LTER)./ ; },
abstract = {Expression of vibrant plumage color plays important communication roles in many avian clades, ranging from penguins to passerines, but comparatively less is known about color signals in parrots (order Psittaciformes). We measured variation in coloration from three plumage patches (red face, blue rump, red tail) in an introduced population of rosy-faced lovebirds (Agapornis roseicollis) in Phoenix, Arizona, USA and examined color differences between the sexes and ages as well as relationships with several indices of quality, including disease presence/absence (infection with beak and feather disease, Circovirus parrot, and a polyomavirus, Gammapolyomavirus avis), nutritional state (e.g., blood glucose and ketone levels), and habitat type from which birds were captured. We found that different plumage colors were linked to different quality indices: (a) adults had redder faces than juveniles, and birds with brighter faces had lower glucose levels and were less likely to have polyomavirus; (b) males had bluer rumps than females; and (c) birds caught farther from the city had redder and darker tail feathers than those caught closer to the urban center. Our findings reveal diverse information underlying variation in the expression of these disparate, ornate feather traits in an introduced parrot species, and suggest that these condition-dependent and/or sexually dichromatic features may serve important intraspecific signaling roles (i.e., mediating rival competitions or mate choices).},
}

@article {pmid39256479,
year = {2024},
author = {Campese, L and Russo, L and Abagnale, M and Alberti, A and Bachi, G and Balestra, C and Bellardini, D and Buondonno, A and Cardini, U and Carotenuto, Y and Checcucci, G and Chiusano, ML and D'Ambra, I and d'Ippolito, G and Di Capua, I and Donnarumma, V and Fontana, A and Furia, M and Galarza-Verkovitch, D and Gallia, R and Labadie, K and Leone, S and Licandro, P and Longo, A and Maselli, M and Merquiol, L and Murano, C and Oliveira, PH and Passarelli, A and Percopo, I and Perdereau, A and Piredda, R and Raffini, F and Roncalli, V and Ruscheweyh, HJ and Russo, E and Saggiomo, M and Santinelli, C and Sarno, D and Sunagawa, S and Tramontano, F and Trano, AC and Uttieri, M and Wincker, P and Zampicinini, G and Casotti, R and Conversano, F and D'Alelio, D and Iudicone, D and Margiotta, F and Montresor, M},
title = {The NEREA Augmented Observatory: an integrative approach to marine coastal ecology.},
journal = {Scientific data},
volume = {11},
number = {1},
pages = {989},
pmid = {39256479},
issn = {2052-4463},
mesh = {*Ecosystem ; Plankton ; Metagenome ; Biodiversity ; Metagenomics ; },
abstract = {The NEREA (Naples Ecological REsearch for Augmented observatories) initiative aims to establish an augmented observatory in the Gulf of Naples (GoN), designed to advance the understanding of marine ecosystems through a holistic approach. Inspired by the Tara Oceans expedition and building on the scientific legacy of the MareChiara Long-Term Ecological Research (LTER-MC) site, NEREA integrates traditional physical, chemical, and biological measurements with state-of-the-art methodologies such as metabarcoding and metagenomics. Here we present the first 10 months of NEREA data, collected from April 2019 to January 2020, encompassing physico-chemical parameters, plankton biodiversity (e.g., microscopy and flow cytometry), prokaryotic and eukaryotic metabarcoding, a prokaryotic gene catalogue, and a collection of 3818 prokaryotic Metagenome-Assembled Genomes (MAGs). NEREA's efforts produce a significant volume of multifaceted data, which enhances our understanding of marine ecosystems and promotes the development of scientific hypotheses and ideas.},
}

*Ecosystem
Plankton
Metagenome
Biodiversity
Metagenomics

@article {pmid39243635,
year = {2024},
author = {Haubrock, PJ and Soto, I and Tarkan, AS and Macêdo, RL and Kouba, A and Cuthbert, RN and Briski, E and Everts, T and Kurtul, I},
title = {Socioeconomic prerequisites determine national long-term biomonitoring efforts.},
journal = {Journal of environmental management},
volume = {370},
number = {},
pages = {122431},
doi = {10.1016/j.jenvman.2024.122431},
pmid = {39243635},
issn = {1095-8630},
abstract = {In the current anthropogenic era characterised by human-induced environmental changes, long-term biomonitoring has become a crucial component for understanding ecological patterns and detecting shifts in biodiversity. However, spatiotemporal inconsistencies in biomonitoring efforts hinder transboundary progress in understanding and mitigating global environmental change effectively. The International Long-Term Ecosystem Research (ILTER) network is one of the largest standardised biomonitoring initiatives worldwide, encompassing 44 countries globally, including 26 European countries that are part of the European Long-Term Ecosystem Research network (eLTER). To better understand the establishment and development of such long-term biomonitoring efforts, we analysed spatial and temporal trends within the eLTER network. Additionally, we evaluated the environmental, social, and economic factors influencing engagement in biomonitoring activities within this European network. Our findings reveal a spatial imbalance, with biomonitoring efforts concentrated in Central and Western European countries, where monitoring initiatives have typically been established for a longer duration. Furthermore, our analyses underscore the complex interplay of economic, geographic, and cultural factors in the development of long-term ecological research infrastructures. Countries with greater geographic connectivity, slower economic growth, and higher research activity are more likely to be involved in the eLTER network. The intensity of biomonitoring significantly increased with greater research investments, economic growth, and elevated levels of tourism. In contrast, it decreased in countries that are more inward-facing and exhibit a belief in their ability to control environmental outcomes independently. Addressing spatial gaps in monitoring necessitates enhanced support and funding to ensure comprehensive ecological monitoring over extended time periods. This is essential for achieving transboundary sustainability and effective biodiversity conservation in the face of global change drivers.},
}

@article {pmid39231974,
year = {2024},
author = {Oliver, T and Varghese, N and Roux, S and Schulz, F and Huntemann, M and Clum, A and Foster, B and Foster, B and Riley, R and LaButti, K and Egan, R and Hajek, P and Mukherjee, S and Ovchinnikova, G and Reddy, TBK and Calhoun, S and Hayes, RD and Rohwer, RR and Zhou, Z and Daum, C and Copeland, A and Chen, IA and Ivanova, NN and Kyrpides, NC and Mouncey, NJ and Del Rio, TG and Grigoriev, IV and Hofmeyr, S and Oliker, L and Yelick, K and Anantharaman, K and McMahon, KD and Woyke, T and Eloe-Fadrosh, EA},
title = {Coassembly and binning of a twenty-year metagenomic time-series from Lake Mendota.},
journal = {Scientific data},
volume = {11},
number = {1},
pages = {966},
pmid = {39231974},
issn = {2052-4463},
support = {DEB-2025982//NSF | BIO | Division of Environmental Biology (DEB)/ ; DEB-1344254//NSF | BIO | Division of Environmental Biology (DEB)/ ; MCB-0702395//NSF | BIO | Division of Molecular and Cellular Biosciences (MCB)/ ; WIS01516, WIS01789, WIS03004//United States Department of Agriculture | Agricultural Research Service (USDA Agricultural Research Service)/ ; DBI-2011002//NSF | BIO | Division of Biological Infrastructure (DBI)/ ; 89233218CNA000001//U.S. Department of Energy (DOE)/ ; DE-AC05-76RL01830//U.S. Department of Energy (DOE)/ ; DE-AC05-00OR22725//U.S. Department of Energy (DOE)/ ; DE-AC02-05CH11231//U.S. Department of Energy (DOE)/ ; 17-SC-20-SC//U.S. Department of Energy (DOE)/ ; },
mesh = {*Lakes/microbiology ; *Metagenome ; Bacteria/genetics/classification ; Phylogeny ; Metagenomics ; },
abstract = {The North Temperate Lakes Long-Term Ecological Research (NTL-LTER) program has been extensively used to improve understanding of how aquatic ecosystems respond to environmental stressors, climate fluctuations, and human activities. Here, we report on the metagenomes of samples collected between 2000 and 2019 from Lake Mendota, a freshwater eutrophic lake within the NTL-LTER site. We utilized the distributed metagenome assembler MetaHipMer to coassemble over 10 terabases (Tbp) of data from 471 individual Illumina-sequenced metagenomes. A total of 95,523,664 contigs were assembled and binned to generate 1,894 non-redundant metagenome-assembled genomes (MAGs) with ≥50% completeness and ≤10% contamination. Phylogenomic analysis revealed that the MAGs were nearly exclusively bacterial, dominated by Pseudomonadota (Proteobacteria, N = 623) and Bacteroidota (N = 321). Nine eukaryotic MAGs were identified by eukCC with six assigned to the phylum Chlorophyta. Additionally, 6,350 high-quality viral sequences were identified by geNomad with the majority classified in the phylum Uroviricota. This expansive coassembled metagenomic dataset provides an unprecedented foundation to advance understanding of microbial communities in freshwater ecosystems and explore temporal ecosystem dynamics.},
}

*Lakes/microbiology
*Metagenome
Bacteria/genetics/classification
Phylogeny
Metagenomics

@article {pmid39229622,
year = {2024},
author = {Vander Zanden, MJ and Gorsky, A and Hansen, GJA and Johnson, PTJ and Latzka, AW and Mikulyuk, A and Rohwer, RR and Spear, MJ and Walsh, JR},
title = {Nine Lessons about Aquatic Invasive Species from the North Temperate Lakes Long-Term Ecological Research (NTL-LTER) Program.},
journal = {Bioscience},
volume = {74},
number = {8},
pages = {509-523},
pmid = {39229622},
issn = {0006-3568},
abstract = {Freshwater ecosystems can serve as model systems that reveal insights into biological invasions. In this article, we summarize nine lessons about aquatic invasive species from the North Temperate Lakes Long-Term Ecological Research program and affiliated projects. The lessons about aquatic invasive species are as follows: Invasive species are more widespread than has been documented; they are usually at low abundance; they can irrupt from low-density populations in response to environmental triggers; they can occasionally have enormous and far-reaching impacts; they can affect microbial communities; reservoirs act as invasive species hotspots; ecosystem vulnerability to invasion can be estimated; invasive species removal can produce long-term benefits; and the impacts of invasive species control may be greater than the impacts of the invasive species. This synthesis highlights how long-term research on a freshwater landscape can advance our understanding of invasions.},
}

@article {pmid39164301,
year = {2024},
author = {Di Capua, I and Luise, F and Zampicinini, G and Roncalli, V and Carotenuto, Y and Piredda, R},
title = {Integrative approach to monitoring metazoan diversity and distribution in two Mediterranean coastal sites through morphology and organismal eDNA.},
journal = {Scientific reports},
volume = {14},
number = {1},
pages = {19291},
pmid = {39164301},
issn = {2045-2322},
mesh = {Animals ; Mediterranean Sea ; *Biodiversity ; *Zooplankton/genetics ; Ecosystem ; Electron Transport Complex IV/genetics ; RNA, Ribosomal, 18S/genetics ; Climate Change ; },
abstract = {Marine and coastal ecosystems respond to climate change in various ways, such as the type of ecosystem, the species composition, interactions, and distribution, and the effect of local stressors. Metazoan organisms, particularly zooplankton, are important indicators for monitoring the effects climate-driven warming in marine coastal ecosystems over the long term. In this study, the diversity and distribution of zooplankton communities in the Mediterranean Sea (Canyon Dohrn and LTER-MareChiara, Gulf of Naples), a known biodiversity and climate changes hotspot, have been assessed using the integration of morphological-based identification and organismal eDNA. Our findings showed that the multi-locus strategy including the mitochondrial cytochrome c oxidase I (COI) gene and the hypervariable region V9 of the 18S rDNA (18S V9) as targets, improved the taxonomic overview, with the COI gene being more effective than the 18S V9 region for metazoans at the species level. However, appendicularians were detected only with the 18S V9 region. Overall, organismal eDNA is a powerful approach for revealing hidden biodiversity, especially for gelatinous and meroplankton components, and provided new insights into biodiversity patterns. The ecological importance of calanoid copepods in coastal ecosystems has been confirmed. In contrast, the discovery of 13 new metazoan records in the Mediterranean Sea, including two non-indigenous copepod species, suggested that local stressors affect zooplankton community structure and resilience, highlighting the importance of biomonitoring and protecting marine coastal ecosystems.},
}

Animals
Mediterranean Sea
*Biodiversity
*Zooplankton/genetics
Ecosystem
Electron Transport Complex IV/genetics
RNA, Ribosomal, 18S/genetics
Climate Change

@article {pmid39128525,
year = {2024},
author = {Haubrock, PJ},
title = {Specific characteristics of a site determine the prevalence of different extreme weather events that affect freshwater macroinvertebrate community richness.},
journal = {The Science of the total environment},
volume = {},
number = {},
pages = {175436},
doi = {10.1016/j.scitotenv.2024.175436},
pmid = {39128525},
issn = {1879-1026},
abstract = {Understanding the impact of extreme weather events on freshwater ecosystems is imperative during a time when a multitude of challenges compromises these environments' health. Exploring how such events affect macroinvertebrate communities in rivers sheds light on the resilience of freshwater ecosystems, which is essential for human well-being and biodiversity conservation. In this study, long-term time series of benthic macroinvertebrate communities from four sites in three freshwater streams within the Rhine-Main-Observatory Long-Term Ecological Research site in Germany were analyzed. Each of them was sampled annually over a span of 20 years to assess the impacts of extreme weather events (floods, droughts, and extreme heat) on macroinvertebrate communities. The findings reveal that the effects of extreme events are site-specific, suggesting that the impact of an extreme event can vary based on several potential factors, including the life history traits of the organisms within the community and the hydrography of the site. Moreover, the analysis highlights that the cumulative impact of these events over time is more significant than the impact of a single event's magnitude, while following distinct temporal dynamics. This underscores the importance of considering both the temporal dynamics and the biological characteristics of communities when evaluating the consequences of extreme weather events on biodiversity, illustrating that the resilience of freshwater ecosystems and their biodiversity under such conditions depends on a complex interplay of factors rather than the severity of individual events.},
}

@article {pmid39105280,
year = {2024},
author = {Connors, E and Dutta, A and Trinh, R and Erazo, N and Dasarathy, S and Ducklow, H and Weissman, JL and Yeh, YC and Schofield, O and Steinberg, D and Fuhrman, J and Bowman, JS},
title = {Microbial community composition predicts bacterial production across ocean ecosystems.},
journal = {The ISME journal},
volume = {},
number = {},
pages = {},
doi = {10.1093/ismejo/wrae158},
pmid = {39105280},
issn = {1751-7370},
abstract = {Microbial ecological functions are an emergent property of community composition. For some ecological functions this link is strong enough that community composition can be used to estimate the quantity of an ecological function. Here, we apply random forest regression models to compare the predictive performance of community composition and environmental data for bacterial production (BP). Using data from two independent long-term ecological research sites - Palmer LTER in Antarctica and Station SPOT in California - we found that community composition was a strong predictor of BP. The top performing model achieved an R2 of 0.84 and RMSE of 20.2 pmol L-1 hr-1 on independent validation data, outperforming a model based solely on environmental data (R2 = 0.32, RMSE = 51.4 pmol L-1 hr-1). We then operationalized our top performing model, estimating BP for 346 Antarctic samples from 2015-2020 for which only community composition data were available. Our predictions resolved spatial trends in BP with significance in the Antarctic (P value = 1 x 10-4) and highlighted important taxa for BP across ocean basins. Our results demonstrate a strong link between microbial community composition and microbial ecosystem function and begin to leverage long-term datasets to construct models of BP based on microbial community composition.},
}

@article {pmid39095611,
year = {2024},
author = {Cocciardi, JM and Hoffman, AM and Alvarado-Serrano, DF and Anderson, J and Blumstein, M and Boehm, EL and Bolin, LG and Borokini, IT and Bradburd, GS and Branch, HA and Brudvig, LA and Chen, Y and Collins, SL and Des Marais, DL and Gamba, D and Hanan, NP and Howard, MM and Jaros, J and Juenger, TE and Kooyers, NJ and Kottler, EJ and Lau, JA and Menon, M and Moeller, DA and Mozdzer, TJ and Sheth, SN and Smith, M and Toll, K and Ungerer, MC and Vahsen, ML and Wadgymar, SM and Waananen, A and Whitney, KD and Avolio, ML},
title = {The value of long-term ecological research for evolutionary insights.},
journal = {Nature ecology & evolution},
volume = {},
number = {},
pages = {},
pmid = {39095611},
issn = {2397-334X},
support = {2110351//NSF | BIO | Division of Environmental Biology (DEB)/ ; 2110351//NSF | BIO | Division of Environmental Biology (DEB)/ ; 2110351//NSF | BIO | Division of Environmental Biology (DEB)/ ; },
abstract = {Scientists must have an integrative understanding of ecology and evolution across spatial and temporal scales to predict how species will respond to global change. Although comprehensively investigating these processes in nature is challenging, the infrastructure and data from long-term ecological research networks can support cross-disciplinary investigations. We propose using these networks to advance our understanding of fundamental evolutionary processes and responses to global change. For ecologists, we outline how long-term ecological experiments can be expanded for evolutionary inquiry, and for evolutionary biologists, we illustrate how observed long-term ecological patterns may motivate new evolutionary questions. We advocate for collaborative, multi-site investigations and discuss barriers to conducting evolutionary work at network sites. Ultimately, these networks offer valuable information and opportunities to improve predictions of species' responses to global change.},
}

@article {pmid39046118,
year = {2024},
author = {Ghosh, S and Matthews, B},
title = {Temporal turnover in species' ranks can explain variation in Taylor's slope for ecological timeseries.},
journal = {Ecology},
volume = {},
number = {},
pages = {e4381},
doi = {10.1002/ecy.4381},
pmid = {39046118},
issn = {1939-9170},
support = {//Board of the Swiss Federal Institutes of Technology/ ; 310030-207910//Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung/ ; //UZH/ ; },
abstract = {The scaling exponent relating the mean and variance of the density of individual organisms in space (i.e., Taylor's slope: zspace) is well studied in ecology, but the analogous scaling exponent for temporal datasets (ztime) is underdeveloped. Previous theory suggests the narrow distribution of ztime (e.g., typically 1-2) could be due to interspecific competition. Here, using 1694 communities time series, we show that ztime can exceed 2, and reaffirm how this can affect our inference about the stabilizing effect of biodiversity. We also develop a new theory, based on temporal change in the ranks of species abundances, to help account for the observed ztime distribution. Specifically, we find that communities with minimal turnover in species' rank abundances are more likely to have higher ztime. Our analysis shows how species-level variability affects our inference about the stability of ecological communities.},
}

@article {pmid39030632,
year = {2024},
author = {Krinos, AI and Bowers, RM and Rohwer, RR and McMahon, KD and Woyke, T and Schulz, F},
title = {Time-series metagenomics reveals changing protistan ecology of a temperate dimictic lake.},
journal = {Microbiome},
volume = {12},
number = {1},
pages = {133},
pmid = {39030632},
issn = {2049-2618},
support = {SC0020347//U.S. Department of Energy/ ; DE-AC02-05CH11231//U.S. Department of Energy/ ; DE-AC02-05CH11231//U.S. Department of Energy/ ; DE-AC02-05CH11231//U.S. Department of Energy/ ; 2011002//National Science Foundation/ ; WIS01516//U.S. Department of Agriculture/ ; DEB-9632853//U.S. National Science Foundation/ ; },
mesh = {*Lakes/microbiology/parasitology ; *Metagenomics ; Animals ; *Bacteria/genetics/classification/isolation & purification ; Eukaryota/genetics/classification ; Phytoplankton/genetics/classification ; Food Chain ; Metagenome ; Zooplankton/genetics/classification ; },
abstract = {BACKGROUND: Protists, single-celled eukaryotic organisms, are critical to food web ecology, contributing to primary productivity and connecting small bacteria and archaea to higher trophic levels. Lake Mendota is a large, eutrophic natural lake that is a Long-Term Ecological Research site and among the world's best-studied freshwater systems. Metagenomic samples have been collected and shotgun sequenced from Lake Mendota for the last 20 years. Here, we analyze this comprehensive time series to infer changes to the structure and function of the protistan community and to hypothesize about their interactions with bacteria.

RESULTS: Based on small subunit rRNA genes extracted from the metagenomes and metagenome-assembled genomes of microeukaryotes, we identify shifts in the eukaryotic phytoplankton community over time, which we predict to be a consequence of reduced zooplankton grazing pressures after the invasion of a invasive predator (the spiny water flea) to the lake. The metagenomic data also reveal the presence of the spiny water flea and the zebra mussel, a second invasive species to Lake Mendota, prior to their visual identification during routine monitoring. Furthermore, we use species co-occurrence and co-abundance analysis to connect the protistan community with bacterial taxa. Correlation analysis suggests that protists and bacteria may interact or respond similarly to environmental conditions. Cryptophytes declined in the second decade of the timeseries, while many alveolate groups (e.g., ciliates and dinoflagellates) and diatoms increased in abundance, changes that have implications for food web efficiency in Lake Mendota.

CONCLUSIONS: We demonstrate that metagenomic sequence-based community analysis can complement existing efforts to monitor protists in Lake Mendota based on microscopy-based count surveys. We observed patterns of seasonal abundance in microeukaryotes in Lake Mendota that corroborated expectations from other systems, including high abundance of cryptophytes in winter and diatoms in fall and spring, but with much higher resolution than previous surveys. Our study identified long-term changes in the abundance of eukaryotic microbes and provided context for the known establishment of an invasive species that catalyzes a trophic cascade involving protists. Our findings are important for decoding potential long-term consequences of human interventions, including invasive species introduction. Video Abstract.},
}

*Lakes/microbiology/parasitology
*Metagenomics
Animals
*Bacteria/genetics/classification/isolation & purification
Eukaryota/genetics/classification
Phytoplankton/genetics/classification
Food Chain
Metagenome
Zooplankton/genetics/classification

@article {pmid38987534,
year = {2024},
author = {Zandonai, A and Fontana, V and Klotz, J and Bertoldi, G and Crepaz, H and Tappeiner, U and Niedrist, G},
title = {Six years of high-resolution climatic data collected along an elevation gradient in the Italian Alps.},
journal = {Scientific data},
volume = {11},
number = {1},
pages = {751},
pmid = {38987534},
issn = {2052-4463},
abstract = {The complex meso- and microclimatic heterogeneity inherent to mountainous regions, driven by both topographic and biotic factors, and the lack of observations, poses significant challenges to using climate models to predict and understand impacts at various scales. We present here a six-year dataset (2017-2022) of continuous climatic measurements collected at five elevations from 983 m to 2705 m above sea level in the Val Mazia - Matschertal valley in the Italian Alps. The measurements include the air temperature, relative humidity, wind speed and direction, solar radiation, soil properties, precipitation, and snow height. Collected within the European Long-Term Ecological Research program (LTER), this dataset is freely available in an open access repository. The time series may be valuable for the validation of regional climate models, atmospheric exchange modelling, and providing support for hydrological models and remote sensing products in mountain environments. Additionally, our data may be useful for research on the influence of elevation on ecological processes such as vegetation growth, plant composition, and soil biology. Beyond its utility in advancing such fundamental research, meteorological monitoring data contribute to informed socio-political decisions on climate adaptation strategies, land management, and water resource planning, enhancing the safety and resilience of mountain communities and biodiversity.},
}

@article {pmid38721801,
year = {2024},
author = {Gerolamo, CS and Pereira, L and Costa, FRC and Jansen, S and Angyalossy, V and Nogueira, A},
title = {Lianas in tropical dry seasonal forests have a high hydraulic efficiency but not always a higher embolism resistance than lianas in rainforests.},
journal = {Annals of botany},
volume = {134},
number = {2},
pages = {337-350},
pmid = {38721801},
issn = {1095-8290},
support = {2013/10679-0//São Paulo Research Foundation/ ; 88882.333016/2019-01//Coordenação de Aperfeiçoamento de Pessoal de Nível Superior - Brazil/ ; 403764/2012-2//Brazilian Long-Term Ecological Research Program/ ; },
mesh = {*Seasons ; *Rainforest ; *Tropical Climate ; Forests ; Water/physiology ; Bignoniaceae/physiology ; Trees/physiology ; Brazil ; },
abstract = {BACKGROUND AND AIMS: Lianas have higher relative abundance and biomass in drier seasonal forests than in rainforests, but whether this difference is associated with their hydraulic strategies is unclear. Here, we investigate whether lianas of seasonally dry forests are safer and more efficient in water transport than rainforest lianas, explaining patterns of liana abundance.

METHODS: We measured hydraulic traits on five pairs of congeneric lianas of the tribe Bignonieae in two contrasting forest sites: the wet 'Dense Ombrophilous Forest' in Central Amazonia (~2 dry months) and the drier 'Semideciduous Seasonal Forest' in the inland Atlantic Forest (~6 dry months). We also gathered a broader database, including 197 trees and 58 liana species from different tropical forests, to compare hydraulic safety between habits and forest types.

KEY RESULTS: Bignonieae lianas from both forests had high and similar hydraulic efficiency but exhibited variability in resistance to embolism across forest types when phylogenetic relationships were taken into account. Three genera had higher hydraulic safety in the seasonal forest than in the rainforest, but species across both forests had similar positive hydraulic safety margins despite lower predawn water potential values of seasonal forest lianas. We did not find the safety-efficiency trade-off. Merging our results with previously published data revealed a high variability of resistance to embolism in both trees and lianas, independent of forest types.

CONCLUSIONS: The high hydraulic efficiency of lianas detected here probably favours their rapid growth across tropical forests, but differences in hydraulic safety highlight that some species are highly vulnerable and may rely on other mechanisms to cope with drought. Future research on the lethal dehydration threshold and the connection between hydraulic resistance strategies and liana abundance could offer further insights into tropical forest dynamics under climatic threats.},
}

*Seasons
*Rainforest
*Tropical Climate
Forests
Water/physiology
Bignoniaceae/physiology
Trees/physiology
Brazil

@article {pmid38976950,
year = {2024},
author = {Paolinelli Reis, B and Branquinho, C and Török, K and Řehounková, K and Nunes, A and Halassy, M},
title = {The added value of the long-term ecological research network to upscale restoration in Europe.},
journal = {Journal of environmental management},
volume = {366},
number = {},
pages = {121736},
doi = {10.1016/j.jenvman.2024.121736},
pmid = {38976950},
issn = {1095-8630},
abstract = {Achieving global restoration targets poses challenges including the need for long-term research and effective monitoring of success, fostering collaborations across diverse fields and actors, ensuring the availability of suitable reference ecosystems, and securing sustained funding. Yet, these conditions are often lacking, limiting the effectiveness of restoration. We provide an overview of ecological restoration practices in the pan-European region of the Long-term Ecological Research Network (eLTER) and demonstrate the importance of eLTER and its potential contributions to support the implementation of the EU Nature Restoration Law. We developed an online questionnaire to collect information on eLTER restoration experts and restoration projects details including the use of eLTER contributions (e.g. infrastructure, data and knowledge), between November 2021 and March 2022. We identified 62 restoration experts and 42 restoration projects from 18 countries. Our results show that eLTER restoration expertise covers most of the European habitats, diverse degradation states and restoration techniques. Most restoration projects (78%) involved long-term monitoring exceeding the average project lifespan, which has proven necessary to achieve restoration success. No common protocol was used for monitoring and evaluation or cost-benefit estimates, but respondents reported effective projects, mostly financed from national funds, and benefits in five ecosystem services on average covered per project. Key eLTER contributions included providing reference ecosystems, biotic and abiotic background data, and interdisciplinary discussion or stakeholder management. Ecological restoration is time intensive and requires long-term research and monitoring standardization to fully understand the restoration process and to ensure comparability across ecosystems. The eLTER network can help address these challenges providing added-value contributions through its infrastructure, long-term datasets, diversity of expertise and strategies that can help identify best restoration practices and support the EU Nature Restoration Law. Finally, additional and long-term funding from the EU and the private sector is needed to achieve global larger-scale restoration targets.},
}

@article {pmid38965107,
year = {2024},
author = {De Michelis, S and Pietrelli, L and Battisti, C and Carosi, M},
title = {First evidence of plastics in coypu (Myocastor coypus)'s platforms.},
journal = {Environmental science and pollution research international},
volume = {},
number = {},
pages = {},
pmid = {38965107},
issn = {1614-7499},
abstract = {Platforms are structures built by coypus for various purposes, such as reproduction, resting, and thermoregulation. In a coastal wetland of central Italy, during a study aimed at investigating the characteristics of coypu's platforms, it was recorded, for the first time worldwide, the presence of plastic in these structures. Through a transect survey, we censused 83 platforms, among which three (3.61%) were found with presence of macro- and megaplastics (polystyrene, polypropylene, and low-density polyethylene in film form; polyester, polyamide, and expanded polystyrene in fragments). Through the FTIR spectra, it was possible to highlight the degradation of the polymeric materials. To stimulate possible in-depth investigations at the level of the food chain (e.g., coypu predators, including canids) in wet habitats, we discussed possible causes and implications of plastic presence in coypus' nest structures.},
}

@article {pmid38952663,
year = {2024},
author = {Power, SN and Thomas, VA and Salvatore, MR and Barrett, JE},
title = {Habitat suitability of biocrust communities in a cold desert ecosystem.},
journal = {Ecology and evolution},
volume = {14},
number = {7},
pages = {e11649},
pmid = {38952663},
issn = {2045-7758},
abstract = {Drylands are unique among terrestrial ecosystems in that they have a significant proportion of primary production facilitated by non-vascular plants such as colonial cyanobacteria, moss, and lichens, i.e., biocrusts, which occur on and in the surface soil. Biocrusts inhabit all continents, including Antarctica, an increasingly dynamic continent on the precipice of change. Here, we describe in-situ field surveying and sampling, remote sensing, and modeling approaches to assess the habitat suitability of biocrusts in the Lake Fryxell basin of Taylor Valley, Antarctica, which is the main site of the McMurdo Dry Valleys Long-Term Ecological Research Program. Soils suitable for the development of biocrusts are typically wetter, less alkaline, and less saline compared to unvegetated soils. Using random forest models, we show that gravimetric water content, electrical conductivity, and snow frequency are the top predictors of biocrust presence and biomass. Areas most suitable for the growth of dense biocrusts are soils associated with seasonal snow patches. Using geospatial data to extrapolate our habitat suitability model to the whole basin predicts that biocrusts are present in 2.7 × 10[5] m[2] and contain 11-72 Mg of aboveground carbon, based on the 90% probability of occurrence. Our study illustrates the synergistic effect of combining field and remote sensing data for understanding the distribution and biomass of biocrusts, a foundational community in the carbon balance of this region. Extreme weather events and changing climate conditions in this region, especially those influencing snow accumulation and persistence, could have significant effects on the future distribution and abundance of biocrusts and therefore soil organic carbon storage in the McMurdo Dry Valleys.},
}

@article {pmid38829405,
year = {2024},
author = {Pilecky, M and Kämmer, SK and Winter, K and Ptacnikova, R and Meador, TB and Wassenaar, LI and Fink, P and Kainz, MJ},
title = {Compound-specific stable isotope analyses of fatty acids indicate feeding zones of zooplankton across the water column of a subalpine lake.},
journal = {Oecologia},
volume = {},
number = {},
pages = {},
pmid = {38829405},
issn = {1432-1939},
support = {Lake Lunz long-term ecological research grant//Amt der NÖ Landesregierung/ ; },
abstract = {Spatial and temporal zooplankton feeding dynamics across the water column of lakes are key for understanding site-specific acquisition of diet sources. During this 6-week lake study, we examined stable carbon (δ[13]C) and nitrogen (δ[15]N) isotopes and conducted compound-specific fatty acid (FA) stable isotope analysis (CSIA) of edible seston in the epi-, meta-, and hypolimnion, and zooplankton of Lake Lunz, Austria. We predicted that CSIA of essential FA can discern the foraging grounds of zooplankton more accurately than the commonly used bulk stable isotopes. The δ[13]C and δ[15]N values of seston from different lake strata were similar, whereas a dual CSIA approach using stable carbon and hydrogen isotopes of FA (δ[13]CFA and δ[2]HFA) provided sufficient isotopic difference in essential FA to discern different lake strata-specific diet sources throughout the study period. We present a CSIA model that suggests strata-specific foraging grounds for different zooplankton groups, indicating higher preference of cladocerans for feeding on epilimnetic diet sources, while calanoid copepods retained more hypolimnetic resources. The CSIA approach thus yields strata-specific information on foraging strategies of different zooplankton taxa and provides more details on the spatial and temporal trophodynamics of planktonic food webs than commonly used bulk stable isotopes.},
}

@article {pmid38770838,
year = {2024},
author = {Marraffini, ML and Hamilton, SL and Marin Jarrin, JR and Ladd, M and Koval, G and Madden, JR and Mangino, I and Parker, LM and Emery, KA and Terhaar, K and Hubbard, DM and Miller, RJ and Dugan, JE},
title = {Evaluating the influence of marine protected areas on surf zone fish.},
journal = {Conservation biology : the journal of the Society for Conservation Biology},
volume = {},
number = {},
pages = {e14296},
doi = {10.1111/cobi.14296},
pmid = {38770838},
issn = {1523-1739},
support = {R/MPA-44andR/MPA-49B//California Sea Grant, University of California, San Diego/ ; OCE-1831937//SBC Long Term Ecological Research National Science Foundation/ ; OCE-2126607//National Science Foundation/ ; C0302700//California Ocean Protection Council/ ; },
abstract = {Marine protected areas (MPAs) globally serve conservation and fisheries management goals, generating positive effects in some marine ecosystems. Surf zones and sandy beaches, critical ecotones bridging land and sea, play a pivotal role in the life cycles of numerous fish species and serve as prime areas for subsistence and recreational fishing. Despite their significance, these areas remain understudied when evaluating the effects of MPAs. We compared surf zone fish assemblages inside and outside MPAs across 3 bioregions in California (USA). Using seines and baited remote underwater videos (BRUVs), we found differences in surf zone fish inside and outside MPAs in one region. Inside south region MPAs, we observed higher abundance (Tukey's honest significant difference [HSD] = 0.83, p = 0.0001) and richness (HSD = 0.22, p = 0.0001) in BRUVs and greater biomass (HSD = 0.32, p = 0.0002) in seine surveys compared with reference sites. Selected live-bearing, fished taxa were positively affected by MPAs. Elasmobranchs displayed greater abundance in BRUV surveys and higher biomass in seine surveys inside south region MPAs (HSD = 0.35, p = 0.0003 and HSD = 0.23, p = 0.008, respectively). Although we observed no overall MPA signal for Embiotocidae, abundances of juvenile and large adult barred surfperch (Amphistichus argenteus), the most abundant fished species, were higher inside MPAs (K-S test D = 0.19, p < 0.0001). Influence of habitat characteristics on MPA performance indicated surf zone width was positively associated with fish abundance and biomass but negatively associated with richness. The south region had the largest positive effect size on all MPA performance metrics. Our findings underscored the variability in species richness and composition across regions and survey methods that significantly affected differences observed inside and outside MPAs. A comprehensive assessment of MPA performance should consider specific taxa, their distribution, and the effects of habitat factors and geography.},
}

@article {pmid38767231,
year = {2024},
author = {Stevens, BLF and Peacock, EE and Crockford, ET and Shalapyonok, A and Neubert, MG and Sosik, HM},
title = {Distinct responses to warming within picoplankton communities across an environmental gradient.},
journal = {Global change biology},
volume = {30},
number = {5},
pages = {e17316},
doi = {10.1111/gcb.17316},
pmid = {38767231},
issn = {1365-2486},
support = {//Audacious Project/ ; 561126//Simons Foundation/ ; 1655686//Division of Ocean Sciences/ ; 1657803//Division of Ocean Sciences/ ; 2322676//Division of Ocean Sciences/ ; },
mesh = {*Synechococcus/physiology/growth & development ; *Climate Change ; *Phytoplankton/physiology ; *Seasons ; Seawater/chemistry ; Temperature ; },
abstract = {Picophytoplankton are a ubiquitous component of marine plankton communities and are expected to be favored by global increases in seawater temperature and stratification associated with climate change. Eukaryotic and prokaryotic picophytoplankton have distinct ecology, and global models predict that the two groups will respond differently to future climate scenarios. At a nearshore observatory on the Northeast US Shelf, however, decades of year-round monitoring have shown these two groups to be highly synchronized in their responses to environmental variability. To reconcile the differences between regional and global predictions for picophytoplankton dynamics, we here investigate the picophytoplankton community across the continental shelf gradient from the nearshore observatory to the continental slope. We analyze flow cytometry data from 22 research cruises, comparing the response of picoeukaryote and Synechococcus communities to environmental variability across time and space. We find that the mechanisms controlling picophytoplankton abundance differ across taxa, season, and distance from shore. Like the prokaryote, Synechococcus, picoeukaryote division rates are limited nearshore by low temperatures in winter and spring, and higher temperatures offshore lead to an earlier spring bloom. Unlike Synechococcus, picoeukaryote concentration in summer decreases dramatically in offshore surface waters and exhibits deeper subsurface maxima. The offshore picoeukaryote community appears to be nutrient limited in the summer and subject to much greater loss rates than Synechococcus. This work both produces and demonstrates the necessity of taxon- and site-specific knowledge for accurately predicting the responses of picophytoplankton to ongoing environmental change.},
}

*Synechococcus/physiology/growth & development
*Climate Change
*Phytoplankton/physiology
*Seasons
Seawater/chemistry
Temperature

@article {pmid38733443,
year = {2024},
author = {Pietrelli, L and Dodaro, G and Pelosi, I and Menegoni, P and Battisti, C and Coccia, C and Scalici, M},
title = {Microplastic in an apex predator: evidence from Barn owl (Tyto alba) pellets in two sites with different levels of anthropization.},
journal = {Environmental science and pollution research international},
volume = {},
number = {},
pages = {},
pmid = {38733443},
issn = {1614-7499},
abstract = {Plastic pollution in terrestrial and freshwater environments and its accumulation along food chains has been poorly studied in birds. The Barn owl (Tyto alba) is an opportunistic and nocturnal apex predator feeding mostly on small mammals. In this note, we reported evidence of microplastics (MPs) contamination in Barn owl pellets collected, for the first time, in two sites with different levels of anthropization (low: natural landscape mosaic vs. high extensive croplands). The following polymers have been recorded: polyvinylchloride (PVC), polyethylene (PE), expanded polyester (EPS), polyethylene terephthalate (PET), polybutylene terephthalate (PBT), polyester (PL), viscose, and starch-based biopolymer. We found significant higher MPs frequency in the most anthropized site. Our results suggest that pellet' analysis may represent a cost-effective method for monitoring MP contamination along food chains in terrestrial ecosystems.},
}

@article {pmid38657809,
year = {2024},
author = {Nguyen, HH and Peters, K and Kiesel, J and Welti, EAR and Gillmann, SM and Lorenz, AW and Jähnig, SC and Haase, P},
title = {Stream macroinvertebrate communities in restored and impacted catchments respond differently to climate, land-use, and runoff over a decade.},
journal = {The Science of the total environment},
volume = {929},
number = {},
pages = {172659},
doi = {10.1016/j.scitotenv.2024.172659},
pmid = {38657809},
issn = {1879-1026},
abstract = {Identifying which environmental drivers underlie degradation and improvements of ecological communities is a fundamental goal of ecology. Achieving this goal is a challenge due to diverse trends in both environmental conditions and ecological communities across regions, and it is constrained by the lack of long-term parallel monitoring of environmental and community data needed to study causal relationships. Here, we identify key environmental drivers using a high-resolution environmental - ecological dataset, an ensemble of the Soil and Water Assessment Tool (SWAT+) model, and ecological models to investigate effects of climate, land-use, and runoff on the decadal trend (2012-2021) of stream macroinvertebrate communities in a restored urban catchment and an impacted catchment with mixed land-uses in Germany. The decadal trends showed decreased precipitation, increased temperature, and reduced anthropogenic land-uses, which led to opposing runoff trends - with decreased runoff in the restored catchment and increased runoff in the impacted catchment. The two catchments also varied in decadal trends of taxonomic and trait composition and metrics. The most significant improvements over time were recorded in communities of the restored catchment sites, which have become wastewater free since 2007 to 2009. Within the restored catchment sites, community metric trends were primarily explained by land-use and evaporation trends, while community composition trends were mostly associated with precipitation and runoff trends. Meanwhile, the communities in the impacted catchment did not undergo significant changes between 2012 and 2021, likely influenced by the effects of prolonged droughts following floods after 2018. The results of our study confirm the significance of restoration and land-use management in fostering long-term improvements in stream communities, while climate change remains a prodigious threat. The coupling of long-term biodiversity monitoring with concurrent sampling of relevant environmental drivers is critical for preventative and restorative management in ecology.},
}

@article {pmid38655624,
year = {2024},
author = {Tumber-Dávila, SJ and Lucey, T and Boose, ER and Laflower, D and León-Sáenz, A and Wilson, BT and MacLean, MG and Thompson, JR},
title = {Hurricanes pose a substantial risk to New England forest carbon stocks.},
journal = {Global change biology},
volume = {30},
number = {4},
pages = {e17259},
doi = {10.1111/gcb.17259},
pmid = {38655624},
issn = {1365-2486},
support = {NSF-DEB1832210//NSF Funded Harvard Forest LTER Program/ ; NSF-DBI 1950364//Harvard Forest LTER REU Program/ ; },
mesh = {*Cyclonic Storms ; New England ; *Forests ; *Climate Change ; Carbon/analysis ; Carbon Sequestration ; Models, Theoretical ; },
abstract = {Nature-based climate solutions (NCS) are championed as a primary tool to mitigate climate change, especially in forested regions capable of storing and sequestering vast amounts of carbon. New England is one of the most heavily forested regions in the United States (>75% forested by land area), and forest carbon is a significant component of climate mitigation policies. Large infrequent disturbances, such as hurricanes, are a major source of uncertainty and risk for policies relying on forest carbon for climate mitigation, especially as climate change is projected to alter the intensity and extent of hurricanes. To date, most research into disturbance impacts on forest carbon stocks has focused on fire. Here, we show that a single hurricane in the region can down between 121 and 250 MMTCO2e or 4.6%-9.4% of the total aboveground forest carbon, much greater than the carbon sequestered annually by New England's forests (16 MMTCO2e year[-1]). However, emissions from hurricanes are not instantaneous; it takes approximately 19 years for downed carbon to become a net emission and 100 years for 90% of the downed carbon to be emitted. Reconstructing hurricanes with the HURRECON and EXPOS models across a range of historical and projected wind speeds, we find that an 8% and 16% increase in hurricane wind speeds leads to a 10.7- and 24.8-fold increase in the extent of high-severity damaged areas (widespread tree mortality). Increased wind speed also leads to unprecedented geographical shifts in damage, both inland and northward, into heavily forested regions traditionally less affected by hurricanes. Given that a single hurricane can emit the equivalent of 10+ years of carbon sequestered by forests in New England, the status of these forests as a durable carbon sink is uncertain. Understanding the risks to forest carbon stocks from disturbances is necessary for decision-makers relying on forests as a NCS.},
}

*Cyclonic Storms
New England
*Forests
*Climate Change
Carbon/analysis
Carbon Sequestration
Models, Theoretical

@article {pmid38643345,
year = {2024},
author = {Grove, M and Pickett, S and Boone, CG and Buckley, GL and Anderson, P and Hoover, FA and Lugo, AE and Meléndez-Ackerman, E and Muñoz-Erickson, TA and Nagendra, H and Selles, LK},
title = {Forging just ecologies: 25 years of urban long-term ecological research collaboration.},
journal = {Ambio},
volume = {},
number = {},
pages = {},
pmid = {38643345},
issn = {1654-7209},
support = {DEB 1855277//National Science Foundation/ ; ENG-1934933//National Science Foundation/ ; },
abstract = {We ask how environmental justice and urban ecology have influenced one another over the past 25 years in the context of the US Long-Term Ecological Research (LTER) program and Baltimore Ecosystem Study (BES) project. BES began after environmental justice emerged through activism and scholarship in the 1980s but spans a period of increasing awareness among ecologists and environmental practitioners. The work in Baltimore provides a detailed example of how ecological research has been affected by a growing understanding of environmental justice. The shift shows how unjust environmental outcomes emerge and are reinforced over time by systemic discrimination and exclusion. We do not comprehensively review the literature on environmental justice in urban ecology but do present four brief cases from the Caribbean, Africa, and Asia, to illustrate the global relevance of the topic. The example cases demonstrate the necessity for continuous engagement with communities in addressing environmental problem solving.},
}

@article {pmid38616524,
year = {2024},
author = {Hardison, EA and Eliason, EJ},
title = {Diet effects on ectotherm thermal performance.},
journal = {Biological reviews of the Cambridge Philosophical Society},
volume = {},
number = {},
pages = {},
doi = {10.1111/brv.13081},
pmid = {38616524},
issn = {1469-185X},
support = {//University of California, Santa Barbara (Eliason Lab Start Up Funds)/ ; OCE-9982105//National Science Foundation (Santa Barbara Coastal Long Term Ecological Research program) under awards/ ; OCE-0620276//National Science Foundation (Santa Barbara Coastal Long Term Ecological Research program) under awards/ ; OCE-1232779//National Science Foundation (Santa Barbara Coastal Long Term Ecological Research program) under awards/ ; OCE-1831937//National Science Foundation (Santa Barbara Coastal Long Term Ecological Research program) under awards/ ; },
abstract = {The environment is changing rapidly, and considerable research is aimed at understanding the capacity of organisms to respond. Changes in environmental temperature are particularly concerning as most animals are ectothermic, with temperature considered a key factor governing their ecology, biogeography, behaviour and physiology. The ability of ectotherms to persist in an increasingly warm, variable, and unpredictable future will depend on their nutritional status. Nutritional resources (e.g. food availability, quality, options) vary across space and time and in response to environmental change, but animals also have the capacity to alter how much they eat and what they eat, which may help them improve their performance under climate change. In this review, we discuss the state of knowledge in the intersection between animal nutrition and temperature. We take a mechanistic approach to describe nutrients (i.e. broad macronutrients, specific lipids, and micronutrients) that may impact thermal performance and discuss what is currently known about their role in ectotherm thermal plasticity, thermoregulatory behaviour, diet preference, and thermal tolerance. We finish by describing how this topic can inform ectotherm biogeography, behaviour, and aquaculture research.},
}

@article {pmid38576091,
year = {2024},
author = {Blumstein, M},
title = {The drivers of intraspecific trait variation and their implications for future tree productivity and survival.},
journal = {American journal of botany},
volume = {},
number = {},
pages = {e16312},
doi = {10.1002/ajb2.16312},
pmid = {38576091},
issn = {1537-2197},
abstract = {Forests are facing unprecedented levels of stress from pest and disease outbreaks, disturbance, fragmentation, development, and a changing climate. These selective agents act to alter forest composition from regional to cellular levels. Thus, a central challenge for understanding how forests will be impacted by future change is how to integrate across scales of biology. Phenotype, or an observable trait, is the product of an individual's genes (G) and the environment in which an organism lives (E). To date, researchers have detailed how environment drives variation in tree phenotypes over long time periods (e.g., long-term ecological research sites [LTERs]) and across large spatial scales (e.g., flux network). In parallel, researchers have discovered the genes and pathways that govern phenotypes, finding high degrees of genetic control and signatures of local adaptation in many plant traits. However, the research in these two areas remain largely independent of each other, hindering our ability to generate accurate predictions of plant response to environment, an increasingly urgent need given threats to forest systems. I present the importance of both genes and environment in determining tree responses to climate stress. I highlight why the difference between G versus E in driving variation is critical for our understanding of climate responses, then propose means of accelerating research that examines G and E simultaneously by leveraging existing long-term, large-scale phenotypic data sets from ecological networks and adding newly affordable sequence (-omics) data to both drill down to find the genes and alleles influencing phenotypes and scale up to find how patterns of demography and local adaptation may influence future response to change.},
}

@article {pmid38572766,
year = {2024},
author = {Ziadeh, CP and Ziadeh, SB and Aflague, BH and Townley, MA and Ayres, MP and Contosta, AR and Garnas, JR},
title = {Distinct communities under the snow: describing characteristics of subnivium arthropod communities.},
journal = {Environmental entomology},
volume = {},
number = {},
pages = {},
doi = {10.1093/ee/nvae017},
pmid = {38572766},
issn = {1938-2936},
support = {1637685//NSF/ ; //LTER/ ; },
abstract = {Arthropods are active during the winter in temperate regions. Many use the seasonal snowpack as a buffer against harsh ambient conditions and are active in a refugium known as the subnivium. While the use of the subnivium by arthropods is well established, far less is known about subnivium community composition, abundance, biomass, and diversity and how these characteristics compare with the community in the summer. Understanding subnivium communities is especially important given the observed and anticipated changes in snowpack depth and duration due to the changing climate. We compared subnivium arthropod communities with those active during the summer using pitfall trapping in northern New Hampshire. We found that compositions of ground-active arthropod communities in the subnivium differed from those in the summer. The subnivium arthropod community featured moderate levels of richness and other measures of diversity that tended to be lower than the summer community. More strikingly, the subnivium community was much lower in overall abundance and biomass. Interestingly, some arthropods were dominant in the subnivium but either rare or absent in summer collections. These putative "subnivium specialists" included the spider Cicurina brevis (Emerton 1890) (Araneae: Hahniidae) and 3 rove beetles (Coleoptera: Staphylinidae): Arpedium cribratum Fauvel, 1878, Lesteva pallipes LeConte, 1863, and Porrhodites inflatus (Hatch, 1957). This study provides a detailed account of the subnivium arthropod community, establishes baseline information on arthropod communities in temperate forests of northeastern North America, and explores the idea of subnivium specialist taxa that are highly active in winter and might be especially vulnerable to climate change.},
}

@article {pmid38522859,
year = {2024},
author = {Liang, M and Lamy, T and Reuman, DC and Wang, S and Bell, TW and Cavanaugh, KC and Castorani, MCN},
title = {A marine heatwave changes the stabilizing effects of biodiversity in kelp forests.},
journal = {Ecology},
volume = {},
number = {},
pages = {e4288},
doi = {10.1002/ecy.4288},
pmid = {38522859},
issn = {1939-9170},
support = {80NSSC22K0169/NASA/NASA/United States ; },
abstract = {Biodiversity can stabilize ecological communities through biological insurance, but climate and other environmental changes may disrupt this process via simultaneous ecosystem destabilization and biodiversity loss. While changes to diversity-stability relationships (DSRs) and the underlying mechanisms have been extensively explored in terrestrial plant communities, this topic remains largely unexplored in benthic marine ecosystems that comprise diverse assemblages of producers and consumers. By analyzing two decades of kelp forest biodiversity survey data, we discovered changes in diversity, stability, and their relationships at multiple scales (biological organizational levels, spatial scales, and functional groups) that were linked with the most severe marine heatwave ever documented in the North Pacific Ocean. Moreover, changes in the strength of DSRs during/after the heatwave were more apparent among functional groups than both biological organizational levels (population vs. ecosystem levels) and spatial scales (local vs. broad scales). Specifically, the strength of DSRs decreased for fishes, increased for mobile invertebrates and understory algae, and were unchanged for sessile invertebrates during/after the heatwave. Our findings suggest that biodiversity plays a key role in stabilizing marine ecosystems, but the resilience of DSRs to adverse climate impacts primarily depends on the functional identities of ecological communities.},
}

@article {pmid38472358,
year = {2024},
author = {Ruggiero, MV and Buffoli, M and Wolf, KKE and D'Alelio, D and Di Tuccio, V and Lombardi, E and Manfellotto, F and Vitale, L and Margiotta, F and Sarno, D and John, U and Ferrante, MI and Montresor, M},
title = {Multiannual patterns of genetic structure and mating type ratios highlight the complex bloom dynamics of a marine planktonic diatom.},
journal = {Scientific reports},
volume = {14},
number = {1},
pages = {6028},
pmid = {38472358},
issn = {2045-2322},
support = {Grant number 7978//Gordon and Betty Moore Foundation/ ; Grant number 7978//Gordon and Betty Moore Foundation/ ; Grant number 7978//Gordon and Betty Moore Foundation/ ; Grant number 7978//Gordon and Betty Moore Foundation/ ; Grant number 7978//Gordon and Betty Moore Foundation/ ; Grant number 7978//Gordon and Betty Moore Foundation/ ; Grant number 7978//Gordon and Betty Moore Foundation/ ; Grant number 7978//Gordon and Betty Moore Foundation/ ; LTER-MC program//Stazione Zoologica Anton Dohrn (SZN), Naples (Italy)/ ; LTER-MC program//Stazione Zoologica Anton Dohrn (SZN), Naples (Italy)/ ; LTER-MC program//Stazione Zoologica Anton Dohrn (SZN), Naples (Italy)/ ; LTER-MC program//Stazione Zoologica Anton Dohrn (SZN), Naples (Italy)/ ; LTER-MC program//Stazione Zoologica Anton Dohrn (SZN), Naples (Italy)/ ; LTER-MC program//Stazione Zoologica Anton Dohrn (SZN), Naples (Italy)/ ; LTER-MC program//Stazione Zoologica Anton Dohrn (SZN), Naples (Italy)/ ; LTER-MC program//Stazione Zoologica Anton Dohrn (SZN), Naples (Italy)/ ; LTER-MC program//Stazione Zoologica Anton Dohrn (SZN), Naples (Italy)/ ; },
abstract = {Understanding the genetic structure of populations and the processes responsible for its spatial and temporal dynamics is vital for assessing species' adaptability and survival in changing environments. We investigate the genetic fingerprinting of blooming populations of the marine diatom Pseudo-nitzschia multistriata in the Gulf of Naples (Mediterranean Sea) from 2008 to 2020. Strains were genotyped using microsatellite fingerprinting and natural samples were also analysed with Microsatellite Pool-seq Barcoding based on Illumina sequencing of microsatellite loci. Both approaches revealed a clonal expansion event in 2013 and a more stable genetic structure during 2017-2020 compared to previous years. The identification of a mating type (MT) determination gene allowed to assign MT to strains isolated over the years. MTs were generally at equilibrium with two notable exceptions, including the clonal bloom of 2013. The populations exhibited linkage equilibrium in most blooms, indicating that sexual reproduction leads to genetic homogenization. Our findings show that P. multistriata blooms exhibit a dynamic genetic and demographic composition over time, most probably determined by deeper-layer cell inocula. Occasional clonal expansions and MT imbalances can potentially affect the persistence and ecological success of planktonic diatoms.},
}

@article {pmid38452836,
year = {2024},
author = {Gallagher, KL and Cimino, MA and Dinniman, MS and Lynch, HJ},
title = {Quantifying potential marine debris sources and potential threats to penguins on the West Antarctic Peninsula.},
journal = {Environmental pollution (Barking, Essex : 1987)},
volume = {},
number = {},
pages = {123714},
doi = {10.1016/j.envpol.2024.123714},
pmid = {38452836},
issn = {1873-6424},
abstract = {Marine pollution is becoming ubiquitous in the environment. Observations of pollution on beaches, in the coastal ocean, and in organisms in the Antarctic are becoming distressingly common. Increasing human activity, growing tourism, and an expanding krill fishing industry along the West Antarctic Peninsula all represent potential sources of plastic pollution and other debris (collectively referred to as debris) to the region. However, the sources of these pollutants from point (pollutants released from discrete sources) versus non-point (pollutants from a large area rather than a specific source) sources are poorly understood. We used buoyant simulated particles released in a high-resolution physical ocean model to quantify pollutant loads throughout the region. We considered non-point sources of debris from the Antarctic Circumpolar Current, Bellingshausen Sea, Weddell Sea, and point source pollution from human activities including tourism, research, and fishing. We also determined possible origins for observed debris based on data from the Southern Ocean Observing System and Palmer Long-Term Ecological Research program. Our results indicate that point source pollution released in the coastal Antarctic is more likely to serve as a source for observed debris than non-point sources, and that the dominant source of pollution is region-specific. Penguin colonies in the South Shetland and Elephant Islands had the greatest debris load from point sources whereas loads from non-point sources were greatest around the southernmost colonies. Penguin colonies at Cornwallis Island and Fort Point were exposed to the highest theoretical debris loads. While these results do not include physical processes such as windage and Stokes Drift that are known to impact debris distributions and transport in the coastal ocean, these results provide critical insights to building an effective stratified sampling and monitoring effort to better understand debris distributions, concentrations, and origins throughout the West Antarctic Peninsula.},
}

@article {pmid38401392,
year = {2024},
author = {Battisti, C and Cesarini, G and Gallitelli, L and Moretti, F and Scalici, M},
title = {Anthropogenic litter in a Mediterranean coastal wetland: A heterogeneous spatial pattern of historical deposition.},
journal = {Marine pollution bulletin},
volume = {201},
number = {},
pages = {116163},
doi = {10.1016/j.marpolbul.2024.116163},
pmid = {38401392},
issn = {1879-3363},
abstract = {Coastal wetlands represent areas that can testify historical accumulation of litter. We analyzed the anthropogenic litter deposited on the channel bottom of a coastal wetland area that experienced water stress due to extreme summer dryness after about 20 years. We hypothesize that the litter accumulated in the different areas over the years reflects the different social user categories (i.e., fishermen, beach users, hunters) and exposure to meteo-marine events. Our findings highlight that historically accumulated litter is composed of plastics (78.8 %), clothes (8.9 %), and glass (4.9 %). Moreover, litter concentration averages 53.6 items/ha in the 8 sectors. The most found categories were common household items (25.4 %), diverse (professional and consumer) items (24.2 %), and food and beverages packaging (21.4 %). Finally, litter diversity indices and the Detrended Correspondence Analysis showed sector and litter type similarities. We reported for the first time the presence of litter accumulated for 20 years testifying non-more occurring recreational activities.},
}

@article {pmid38374154,
year = {2024},
author = {Wang, FQ and Bartosik, D and Sidhu, C and Siebers, R and Lu, DC and Trautwein-Schult, A and Becher, D and Huettel, B and Rick, J and Kirstein, IV and Wiltshire, KH and Schweder, T and Fuchs, BM and Bengtsson, MM and Teeling, H and Amann, RI},
title = {Particle-attached bacteria act as gatekeepers in the decomposition of complex phytoplankton polysaccharides.},
journal = {Microbiome},
volume = {12},
number = {1},
pages = {32},
pmid = {38374154},
issn = {2049-2618},
support = {AM 73/9-3//Deutsche Forschungsgemeinschaft,Germany/ ; SCHW 595/10-3//Deutsche Forschungsgemeinschaft,Germany/ ; TE 813/2-3//Deutsche Forschungsgemeinschaft,Germany/ ; RI 969/9-2//Deutsche Forschungsgemeinschaft,Germany/ ; BE 3869/4-3//Deutsche Forschungsgemeinschaft,Germany/ ; SCHW 595/11-3//Deutsche Forschungsgemeinschaft,Germany/ ; FU 627/2-3//Deutsche Forschungsgemeinschaft,Germany/ ; RI 969/9-2//Deutsche Forschungsgemeinschaft,Germany/ ; TE 813/2-3//Deutsche Forschungsgemeinschaft,Germany/ ; AM 73/9-3//Deutsche Forschungsgemeinschaft,Germany/ ; AWI_BAH_o 1//Biological Station Helgoland, Alfred Wegener Institute, Helmholtz Center for Polar and Marine Research/ ; AWI_BAH_o 1//Biological Station Helgoland, Alfred Wegener Institute, Helmholtz Center for Polar and Marine Research/ ; },
mesh = {Phytoplankton/genetics/metabolism ; Eutrophication ; Polysaccharides/metabolism ; *Flavobacteriaceae/metabolism ; *Microalgae/metabolism ; },
abstract = {BACKGROUND: Marine microalgae (phytoplankton) mediate almost half of the worldwide photosynthetic carbon dioxide fixation and therefore play a pivotal role in global carbon cycling, most prominently during massive phytoplankton blooms. Phytoplankton biomass consists of considerable proportions of polysaccharides, substantial parts of which are rapidly remineralized by heterotrophic bacteria. We analyzed the diversity, activity, and functional potential of such polysaccharide-degrading bacteria in different size fractions during a diverse spring phytoplankton bloom at Helgoland Roads (southern North Sea) at high temporal resolution using microscopic, physicochemical, biodiversity, metagenome, and metaproteome analyses.

RESULTS: Prominent active 0.2-3 µm free-living clades comprised Aurantivirga, "Formosa", Cd. Prosiliicoccus, NS4, NS5, Amylibacter, Planktomarina, SAR11 Ia, SAR92, and SAR86, whereas BD1-7, Stappiaceae, Nitrincolaceae, Methylophagaceae, Sulfitobacter, NS9, Polaribacter, Lentimonas, CL500-3, Algibacter, and Glaciecola dominated 3-10 µm and > 10 µm particles. Particle-attached bacteria were more diverse and exhibited more dynamic adaptive shifts over time in terms of taxonomic composition and repertoires of encoded polysaccharide-targeting enzymes. In total, 305 species-level metagenome-assembled genomes were obtained, including 152 particle-attached bacteria, 100 of which were novel for the sampling site with 76 representing new species. Compared to free-living bacteria, they featured on average larger metagenome-assembled genomes with higher proportions of polysaccharide utilization loci. The latter were predicted to target a broader spectrum of polysaccharide substrates, ranging from readily soluble, simple structured storage polysaccharides (e.g., laminarin, α-glucans) to less soluble, complex structural, or secreted polysaccharides (e.g., xylans, cellulose, pectins). In particular, the potential to target poorly soluble or complex polysaccharides was more widespread among abundant and active particle-attached bacteria.

CONCLUSIONS: Particle-attached bacteria represented only 1% of all bloom-associated bacteria, yet our data suggest that many abundant active clades played a pivotal gatekeeping role in the solubilization and subsequent degradation of numerous important classes of algal glycans. The high diversity of polysaccharide niches among the most active particle-attached clades therefore is a determining factor for the proportion of algal polysaccharides that can be rapidly remineralized during generally short-lived phytoplankton bloom events. Video Abstract.},
}

Phytoplankton/genetics/metabolism
Eutrophication
Polysaccharides/metabolism
*Flavobacteriaceae/metabolism
*Microalgae/metabolism

@article {pmid38366166,
year = {2024},
author = {Nelson, C and Dadi, P and Shah, DD and Garcia-Pichel, F},
title = {Spatial organization of a soil cyanobacterium and its cyanosphere through GABA/Glu signaling to optimize mutualistic nitrogen fixation.},
journal = {The ISME journal},
volume = {18},
number = {1},
pages = {},
pmid = {38366166},
issn = {1751-7370},
support = {2025166//Jornada Basin LTER Graduate Research Fellowship Program/ ; 2129537//National Science Foundation/ ; DEB 2025166//Jornada Basin LTER Graduate Research Fellowship Program/ ; DEB 2129537//National Science Foundation/ ; },
mesh = {*Soil ; Symbiosis ; Nitrogen Fixation ; *Microbiota ; Soil Microbiology ; },
abstract = {Soil biocrusts are characterized by the spatial self-organization of resident microbial populations at small scales. The cyanobacterium Microcoleus vaginatus, a prominent primary producer and pioneer biocrust former, relies on a mutualistic carbon (C) for nitrogen (N) exchange with its heterotrophic cyanosphere microbiome, a mutualism that may be optimized through the ability of the cyanobacterium to aggregate into bundles of trichomes. Testing both environmental populations and representative isolates, we show that the proximity of mutualistic diazotroph populations results in M. vaginatus bundle formation orchestrated through chemophobic and chemokinetic responses to gamma-aminobutyric acid (GABA) /glutamate (Glu) signals. The signaling system is characterized by: a high GABA sensitivity (nM range) and low Glu sensitivity (μM to mM), the fact that GABA and Glu are produced by the cyanobacterium as an autoinduction response to N deficiency, and by the presence of interspecific signaling by heterotrophs in response to C limitation. Further, it crucially switches from a positive to a negative feedback loop with increasing GABA concentration, thus setting maximal bundle sizes. The unprecedented use of GABA/Glu as an intra- and interspecific signal in the spatial organization of microbiomes highlights the pair as truly universal infochemicals.},
}

*Soil
Symbiosis
Nitrogen Fixation
*Microbiota
Soil Microbiology

@article {pmid38273535,
year = {2024},
author = {Lewis, ASL and Lau, MP and Jane, SF and Rose, KC and Be'eri-Shlevin, Y and Burnet, SH and Clayer, F and Feuchtmayr, H and Grossart, HP and Howard, DW and Mariash, H and Delgado Martin, J and North, RL and Oleksy, I and Pilla, RM and Smagula, AP and Sommaruga, R and Steiner, SE and Verburg, P and Wain, D and Weyhenmeyer, GA and Carey, CC},
title = {Anoxia begets anoxia: A positive feedback to the deoxygenation of temperate lakes.},
journal = {Global change biology},
volume = {30},
number = {1},
pages = {e17046},
doi = {10.1111/gcb.17046},
pmid = {38273535},
issn = {1365-2486},
support = {//College of Science Roundtable at Virginia Tech/ ; //Cornell Atkinson Center for Sustainability, Cornell University/ ; GR1540/37-1//Deutsche Forschungsgemeinschaft/ ; //EMALCSA Chair/ ; //Institute for Critical Technology and Applied Science/ ; //Leibniz-Institut für Gewässerökologie und Binnenfischerei/ ; //LTSER Platform Tyrolean Alps (LTER-Austria)/ ; C01X2205//Ministry of Business, Innovation and Employment/ ; //Missouri Department of Natural Resources/ ; 1737424//National Science Foundation/ ; 1753639//National Science Foundation/ ; 1754265//National Science Foundation/ ; 1840995//National Science Foundation/ ; 1933016//National Science Foundation/ ; 2019528//National Science Foundation/ ; 2048031//National Science Foundation/ ; NE/R016429/1//Natural Environment Research Council/ ; //Oak Ridge National Laboratory/ ; 2020-01091//Svenska Forskningsrådet Formas/ ; 2020-03222//Vetenskapsrådet/ ; //Water Power Technologies Office/ ; },
mesh = {Humans ; *Lakes ; Chlorophyll A/analysis ; *Environmental Monitoring/methods ; Feedback ; Hypoxia ; Phosphorus/analysis ; Oxygen ; Eutrophication ; },
abstract = {Declining oxygen concentrations in the deep waters of lakes worldwide pose a pressing environmental and societal challenge. Existing theory suggests that low deep-water dissolved oxygen (DO) concentrations could trigger a positive feedback through which anoxia (i.e., very low DO) during a given summer begets increasingly severe occurrences of anoxia in following summers. Specifically, anoxic conditions can promote nutrient release from sediments, thereby stimulating phytoplankton growth, and subsequent phytoplankton decomposition can fuel heterotrophic respiration, resulting in increased spatial extent and duration of anoxia. However, while the individual relationships in this feedback are well established, to our knowledge, there has not been a systematic analysis within or across lakes that simultaneously demonstrates all of the mechanisms necessary to produce a positive feedback that reinforces anoxia. Here, we compiled data from 656 widespread temperate lakes and reservoirs to analyze the proposed anoxia begets anoxia feedback. Lakes in the dataset span a broad range of surface area (1-126,909 ha), maximum depth (6-370 m), and morphometry, with a median time-series duration of 30 years at each lake. Using linear mixed models, we found support for each of the positive feedback relationships between anoxia, phosphorus concentrations, chlorophyll a concentrations, and oxygen demand across the 656-lake dataset. Likewise, we found further support for these relationships by analyzing time-series data from individual lakes. Our results indicate that the strength of these feedback relationships may vary with lake-specific characteristics: For example, we found that surface phosphorus concentrations were more positively associated with chlorophyll a in high-phosphorus lakes, and oxygen demand had a stronger influence on the extent of anoxia in deep lakes. Taken together, these results support the existence of a positive feedback that could magnify the effects of climate change and other anthropogenic pressures driving the development of anoxia in lakes around the world.},
}

Humans
*Lakes
Chlorophyll A/analysis
*Environmental Monitoring/methods
Feedback
Hypoxia
Phosphorus/analysis
Oxygen
Eutrophication

@article {pmid38273449,
year = {2024},
author = {Wojcikiewicz, R and Ji, W and Hanan, NP},
title = {Quantifying shrub-shrub competition in drylands using aerial imagery and a novel landscape competition index.},
journal = {The New phytologist},
volume = {241},
number = {5},
pages = {1973-1984},
doi = {10.1111/nph.19505},
pmid = {38273449},
issn = {1469-8137},
support = {//National Science Foundation/ ; //Agricultural Experiment Station, New Mexico State University/ ; },
mesh = {*Ecosystem ; New Mexico ; Soil ; *Prosopis ; },
abstract = {The Jornada Basin Long-Term Ecological Research Site (JRN-LTER, or JRN) is a semiarid grassland-shrubland in southern New Mexico, USA. The role of intraspecific competition in constraining shrub growth and establishment at the JRN and in arid systems, in general, is an important question in dryland studies. Using information on shrub distributions and growth habits at the JRN, we present a novel landscape-scale (c. 1 ha) metric (the 'competition index', CI), which quantifies the potential intensity of competitive interactions. We map and compare the intensity of honey mesquite (Prosopis glandulosa, Torr.) competition spatially and temporally across the JRN-LTER, investigating associations of CI with shrub distribution, density, and soil types. The CI metric shows strong correlation with values of percent cover. Mapping CI across the Jornada Basin shows that high-intensity intraspecific competition is not prevalent, with few locations where intense competition is likely to be limiting further honey mesquite expansion. Comparison of CI among physiographic provinces shows differences in average CI values associated with geomorphology, topography, and soil type, suggesting that edaphic conditions may impose important constraints on honey mesquite and growth. However, declining and negative growth rates with increasing CI suggest that intraspecific competition constrains growth rates when CI increases above c. 0.5.},
}

*Ecosystem
New Mexico
Soil
*Prosopis

@article {pmid38242304,
year = {2024},
author = {Battisti, C},
title = {Changes in bird assemblages following an outdoor music festival: A BACI (before-after-control-impact) monitoring from central Italy.},
journal = {Environmental pollution (Barking, Essex : 1987)},
volume = {344},
number = {},
pages = {123384},
doi = {10.1016/j.envpol.2024.123384},
pmid = {38242304},
issn = {1873-6424},
abstract = {An assessment of the short-term effects of an outdoor music festival (Jova Beach Party event; July 2019; central Italy) on bird assemblages has been carried out, adopting a BACI (Before-After-Control-Impact) survey design, and using the point counts method both in the impact site (Impact, I; where the concert was held) and in comparable Control site (C). In the I site, data have been stratified both for urban (U) and agro-mosaic (M) habitats. When comparing before and after the music event, in IU site, the species richness and the Hill diversity index decreased, differently from CU where species richness a species abundance increased. Diversity profiles highlighted the impoverishment of bird assemblages after the event, but only in the Impact urban habitats. After the musical event, individual rarefaction curves for richness were lower in IU after the concert, while, differently in CU curves are higher. These data suggest an impact in bird assemblages limited to the urban site, due to the stress mainly induced by high intensity noise pollution. Musical events may disrupt the structure of synanthropic bird assemblages, inducing a dispersal of individuals towards the surrounding landscape. Starling (Sturnus vulgaris) appeared a particularly sensitive bird. However, further efforts are necessary to study the effects of these events at species level.},
}

@article {pmid38181959,
year = {2024},
author = {Vascotto, I and Bernardi Aubry, F and Bastianini, M and Mozetič, P and Finotto, S and Francé, J},
title = {Exploring the mesoscale connectivity of phytoplankton periodic assemblages' succession in northern Adriatic pelagic habitats.},
journal = {The Science of the total environment},
volume = {913},
number = {},
pages = {169814},
doi = {10.1016/j.scitotenv.2023.169814},
pmid = {38181959},
issn = {1879-1026},
mesh = {*Phytoplankton ; *Ecosystem ; Oceans and Seas ; Rivers ; Italy ; Seasons ; },
abstract = {An appropriate model for phytoplankton distribution patterns is critical for understanding biogeochemical cycles and trophic interactions in the oceans and seas. Because phytoplankton dynamics in coastal waters are more complex due to shallow depth and proximity to land, more accurate models applied to the correct spatial and temporal scales are needed. Our study investigates the role of the atmosphere and hydrosphere in pelagic habitat by modelling phytoplankton assemblages at two Long Term Ecological Research sites in the northern Adriatic Sea using niche-forming environmental variables (wind, temperature, salinity, river discharge, rain, and water column stratification). To study the synchronization between the phytoplankton community and these environmental variables at the two LTER sites, we applied current linear and nonlinear numerical methods for ecological modelling. The aim was to use periodic and/or non-periodic properties of the environmental variables to classify the phytoplankton assemblages at one LTER site (Gulf of Trieste - Slovenia) and then predict them at another LTER site 100 km away (Gulf of Venice - Italy). We found that periodicity played a role in the explanatory and predictive power of the environmental variables and that it was more important than non-periodic events in defining the common structure of the two pelagic habitats. The non-linear classification functions of the neural networks further increased the predictive power of these variables. We observed partial synchronization of communities at the mesoscale and differences between the original and predicted assemblages under similar environmental conditions. We conclude that mesoscale connectivity plays an important role in phytoplankton communities in the northern Adriatic. However, the loss of periodicity of niche-forming variables due to more frequent extreme meteorological and hydrological events could loosen these connections and affect the temporal succession of phytoplankton assemblages.},
}

*Phytoplankton
*Ecosystem
Oceans and Seas
Rivers
Italy
Seasons

@article {pmid38170360,
year = {2024},
author = {Ciaralli, L and Rotini, A and Scalici, M and Battisti, C and Chiesa, S and Christoforou, E and Libralato, G and Manfra, L},
title = {The under-investigated plastic threat on seagrasses worldwide: a comprehensive review.},
journal = {Environmental science and pollution research international},
volume = {31},
number = {6},
pages = {8341-8353},
pmid = {38170360},
issn = {1614-7499},
mesh = {*Ecosystem ; *Plastics ; Environmental Pollution ; Microplastics ; Europe ; },
abstract = {Marine plastic pollution is a well-recognised and debated issue affecting most marine ecosystems. Despite this, the threat of plastic pollution on seagrasses has not received significant scientific attention compared to other marine species and habitats. The present review aims to summarise the scientific data published in the last decade (January 2012-2023), concerning the evaluation of plastic pollution, of all sizes and types, including bio-based polymers, on several seagrass species worldwide. To achieve this goal, a comprehensive and critical review of 26 scientific papers has been carried out, taking into consideration the investigated areas, the seagrass species and the plant parts considered, the experimental design and the type of polymers analysed, both in field monitoring and in laboratory-controlled experiments. The outcomes of the present review clearly showed that the dynamics and effects of plastic pollution in seagrass are still under-explored. Most data emerged from Europe, with little or no data on plastic pollution in North and South America, Australia, Africa and Antarctica. Most of the studies were devoted to microplastics, with limited studies dedicated to macroplastics and only one to nanoplastics. The methodological approach (in terms of experimental design and polymer physico-chemical characterisation) should be carefully standardised, beside the use of a model species, such as Zostera marina, and further laboratory experiments. All these knowledge gaps must be urgently fulfilled, since valuable and reliable scientific knowledge is necessary to improve seagrass habitat protection measures against the current plastic pollution crisis.},
}

*Ecosystem
*Plastics
Environmental Pollution
Microplastics
Europe

@article {pmid38168486,
year = {2024},
author = {Duell, EB and Baum, KA and Wilson, GWT},
title = {Drought reduces productivity and anti-herbivore defences, but not mycorrhizal associations, of perennial prairie forbs.},
journal = {Plant biology (Stuttgart, Germany)},
volume = {26},
number = {2},
pages = {204-213},
doi = {10.1111/plb.13604},
pmid = {38168486},
issn = {1438-8677},
support = {1003475//National Institute of Food and Agriculture/ ; OIA 1656006//National Science Foundation/ ; NSF DEB-1440484//National Science Foundation Long-Term Ecological Research/ ; G12AC00002//South Central Climate Adaptation Science Center/ ; },
mesh = {Animals ; *Mycorrhizae ; Herbivory ; Plant Nectar ; Grassland ; Droughts ; Water ; Soil ; },
abstract = {During drought, plants allocate resources to aboveground biomass production and belowground carbohydrate reserves, often at the expense of production of defence traits. Additionally, drought has been shown to alter floral resources, with potential implications for plant-pollinator interactions. Although soil symbionts, such as arbuscular mycorrhizal (AM) fungi, can alleviate drought stress in plants, certain levels of drought may negatively impact this relationship, with potential cascading effects. Because of their importance to plant and animal community diversity, we examined effects of drought on biomass production, physical defence properties, nectar production, and associated AM fungal abundance of five common prairie forb species in a greenhouse study. Reduced soil moisture decreased vegetative biomass production. Production of trichomes and latex decreased under drought, relative to well-watered conditions. Ruellia humilis flowers produced less nectar under drought, relative to well-watered conditions. Intra-radical AM fungal colonization was not significantly affected by drought, although extra-radical AM fungal biomass associated with S. azurea decreased following drought. Overall, grassland forb productivity, defence, and nectar production were negatively impacted by moderate drought, with possible negative implications for biotic interactions. Reduced flower and nectar production may lead to fewer pollinator visitors, which may contribute to seed limitation in forb species. Reduced physical defences increase the likelihood of herbivory, further decreasing the ability to store energy for essential functions, such as reproduction. Together, these results suggest drought can potentially impact biotic interactions between plants and herbivores, pollinators, and soil symbionts, and highlights the need for direct assessments of these relationships under climate change scenarios.},
}

Animals
*Mycorrhizae
Herbivory
Plant Nectar
Grassland
Droughts
Water
Soil

@article {pmid38129676,
year = {2023},
author = {Zhu, Q and Larson, KL},
title = {Multi-Scalar Drivers of Residential Vegetation Changes in Metropolitan Phoenix, Arizona.},
journal = {Environmental management},
volume = {},
number = {},
pages = {},
pmid = {38129676},
issn = {1432-1009},
support = {DEB-1832016//National Science Foundation/ ; DEB-1832016//National Science Foundation/ ; DEB-2224662//Central Arizona-Phoenix Long-Term Ecological Research Program/ ; DEB-2224662//Central Arizona-Phoenix Long-Term Ecological Research Program/ ; },
abstract = {In the arid southwestern U.S., urban greening strategies have been promoted to alleviate ecosystem disservices associated with lawns, including the adoption of xeric yards with desert-adapted floras and gravel groundcover and wildlife-friendly yards with complex vegetation structure and composition. Scant studies have investigated the extent of different vegetation changes in urban greening practices and the complexity of associated human drivers. We addressed this gap by analyzing survey data from two survey periods (2017 and 2021) to answer the following questions: to what extent have residents from metropolitan Phoenix made different vegetation changes in their yards over the last decade, and how do multi-scalar human drivers affect different vegetation changes? We found a sustainable trajectory for residential vegetation changes in Phoenix since mid-2010s, with declining additions of grass and increases in trees and desert plants across residential neighborhoods. Esthetics was an influential driver of both tree planting and native gardening. Additionally, tree planting was associated with anthropocentric values (i.e., low-maintenance needs), while desert plant additions reflected the appreciation of nature (i.e., attitudes towards the desert) and environmental concerns (i.e., supporting wildlife). Institutions such as local government programs might shape residents' vegetation choices, as tree planting differed among municipalities. We also found counterintuitive influences of residential tenure controls on landscaping decisions. Specifically, renters were more likely to add yard trees compared to homeowners. Our results inform landscape sustainability by identifying potential pathways to residential yard changes that offer a multitude of services while being appreciated and maintained by residents.},
}

@article {pmid38091643,
year = {2024},
author = {Vollrath, SR and Lemos, VM and Vieira, JP and Garcia, AM},
title = {Long-term trends in juvenile Mugil liza abundance in relation to selected environmental and fisheries influences in southern Brazil.},
journal = {Marine environmental research},
volume = {193},
number = {},
pages = {106290},
doi = {10.1016/j.marenvres.2023.106290},
pmid = {38091643},
issn = {1879-0291},
mesh = {Animals ; *Ecosystem ; Fisheries ; Brazil ; Conservation of Natural Resources ; Water ; *Smegmamorpha/physiology ; },
abstract = {Overfishing constitutes a major threat affecting marine fish population worldwide, including mullet species that have been exploited by fisheries during the reproductive migration in temperate and tropical latitudes for millennia. In the present study, we investigated the relationship of fishing intensity of mullet Mugil liza during its reproductive migration and the abundance of their juveniles in an essential nursery ground for the species in the southwest Atlantic Ocean. To carry out this analysis, we used a 23-year standardized long-term time series (1997-2019) of monthly abundance of M. liza juveniles, local/regional (water temperature, salinity, water transparency and river discharge) and global (ENSO) environmental factors, along with compilations of fishing landing data for the species. Generalized Additive Models (GAM) revealed the negative effect of fishing adult populations on the abundance of juveniles when they reach the marine surf-zone and after recruiting into the estuary. Our results reinforce the importance of adequate conservation and fishery regulation policies to prevent the species' stock from collapsing.},
}

Animals
*Ecosystem
Fisheries
Brazil
Conservation of Natural Resources
Water
*Smegmamorpha/physiology

@article {pmid38071696,
year = {2023},
author = {Peinetti, HR and Bestelmeyer, BT and Chirino, CC and Vivalda, FL and Kin, AG},
title = {Thresholds and alternative states in a Neotropical dry forest in response to fire severity.},
journal = {Ecological applications : a publication of the Ecological Society of America},
volume = {},
number = {},
pages = {e2937},
doi = {10.1002/eap.2937},
pmid = {38071696},
issn = {1051-0761},
support = {agreement 3050-11210-009-51-N//Agricultural Research Service/ ; DEB-1832194//Jornada Basin Long-Term Ecological Research Program/ ; POIRE 2016-18//Universidad Nacional de La Pampa/ ; },
abstract = {Neotropical xerophytic forest ecosystems evolved with fires that shaped their resilience to disturbance events. However, it is unknown whether forest resilience to fires persists under a new fire regime influenced by anthropogenic disturbance and climate change. We asked whether there was evidence for a fire severity threshold causing an abrupt transition from a forest to an alternative shrub thicket state in the presence of typical postfire management. We studied a heterogeneous wildfire event to assess medium-term effects (11 years) of varying fire severity in a xerophytic Caldén forest in central Argentina. We conducted vegetation surveys in patches that were exposed to low (LFS), medium (MFS), and high (HFS) fire severities but had similar prefire woody canopy cover. Satellite images were used to quantify fire severity using a delta Normalized Burning Ratio (dNBR) and to map prefire canopy cover. Postfire total woody canopy cover was higher in low and medium than high severity patches, but the understory woody component was highest in HFS patches. The density of woody plants was over three times higher under HFS than MFS and LFS due to the contribution of small woody plants to the total density. Unlike LFS and MFS patches, the small plants in HFS patches were persistent, multistem shrubs that resulted from the resprouting of top-killed Prosopis caldenia trees and, more importantly, from young shrubs that probably established after the wildfire. Our results suggest that the Caldén forest is resilient to fires of low to moderate severities but not to high-severity fires. Fire severities with dNBR values > ~600 triggered an abrupt transition to a shrub thicket state. Postfire grazing and controlled-fire treatments likely contributed to shrub dominance after high-severity wildfire. Forest to shrub thicket transitions enable recurring high-severity fire events. We propose that repeated fires combined with grazing can trap the system in a shrub thicket state. Further studies are needed to determine whether the relationships between fire and vegetation structure examined in this case study represent general mechanisms of irreversible state changes across the Caldenal forest region and whether analogous threshold relationships exist in other fire-prone woodland ecosystems.},
}

@article {pmid38070183,
year = {2024},
author = {Zukswert, JM and Vadeboncoeur, MA and Yanai, RD},
title = {Responses of stomatal density and carbon isotope composition of sugar maple and yellow birch foliage to N, P and CaSiO3 fertilization.},
journal = {Tree physiology},
volume = {44},
number = {1},
pages = {},
doi = {10.1093/treephys/tpad142},
pmid = {38070183},
issn = {1758-4469},
support = {2019-67019-29464//United Stated Department of Agriculture National Institute of Food and Agriculture/ ; DEB-1637685//National Science Foundation Long-Term Ecological Research/ ; //Edna B. Sussman Fellowship/ ; },
mesh = {*Betula/physiology ; *Acer/physiology ; Carbon Isotopes ; Trees/physiology ; Fertilization ; Plant Leaves/physiology ; },
abstract = {Stomatal density, stomatal length and carbon isotope composition can all provide insights into environmental controls on photosynthesis and transpiration. Stomatal measurements can be time-consuming; it is therefore wise to consider efficient sampling schemes. Knowing the variance partitioning at different measurement levels (i.e., among stands, plots, trees, leaves and within leaves) can aid in making informed decisions around where to focus sampling effort. In this study, we explored the effects of nitrogen (N), phosphorus (P) and calcium silicate (CaSiO3) addition on stomatal density, length and carbon isotope composition (δ13C) of sugar maple (Acer saccharum Marsh.) and yellow birch (Betula alleghaniensis Britton). We observed a positive but small (8%) increase in stomatal density with P addition and an increase in δ13C with N and CaSiO3 addition in sugar maple, but we did not observe effects of nutrient addition on these characteristics in yellow birch. Variability was highest within leaves and among trees for stomatal density and highest among stomata for stomatal length. To reduce variability and increase chances of detecting treatment differences in stomatal density and length, future protocols should consider pretreatment and repeated measurements of trees over time or measure more trees per plot, increase the number of leaf impressions or standardize their locations, measure more stomata per image and ensure consistent light availability.},
}

*Betula/physiology
*Acer/physiology
Carbon Isotopes
Trees/physiology
Fertilization
Plant Leaves/physiology

@article {pmid38037301,
year = {2024},
author = {Siqueira, T and Hawkins, CP and Olden, JD and Tonkin, J and Comte, L and Saito, VS and Anderson, TL and Barbosa, GP and Bonada, N and Bonecker, CC and Cañedo-Argüelles, M and Datry, T and Flinn, MB and Fortuño, P and Gerrish, GA and Haase, P and Hill, MJ and Hood, JM and Huttunen, KL and Jeffries, MJ and Muotka, T and O'Donnell, DR and Paavola, R and Paril, P and Paterson, MJ and Patrick, CJ and Perbiche-Neves, G and Rodrigues, LC and Schneider, SC and Straka, M and Ruhi, A},
title = {Understanding temporal variability across trophic levels and spatial scales in freshwater ecosystems.},
journal = {Ecology},
volume = {105},
number = {2},
pages = {e4219},
doi = {10.1002/ecy.4219},
pmid = {38037301},
issn = {1939-9170},
support = {2017SGR1643//Agència de Gestió d'Ajuts Universitaris i de Recerca/ ; 309496/2021-7//Conselho Nacional de Desenvolvimento Científico e Tecnológico/ ; 871128//eLTER PLUS/ ; FADR65//Fish and Wildlife Service and the Division of Wildlife/ ; FADX09//Fish and Wildlife Service and the Division of Wildlife/ ; FADB02//Fish and Wildlife Service and the Division of Wildlife/ ; 19/04033-7//Fundação de Amparo à Pesquisa do Estado de São Paulo/ ; 2019/06291-3//Fundação de Amparo à Pesquisa do Estado de São Paulo/ ; 21/00619-7//Fundação de Amparo à Pesquisa do Estado de São Paulo/ ; P505-20-17305S//Grantová Agentura České Republiky/ ; 2047324//National Science Foundation/ ; IOS-1754838//National Science Foundation/ ; #DEB-2025982//NTL LTER/ ; RYC2020-029829-I//Ramón y Cajal Fellowship/ ; RDF-18-UOC-007//Royal Society Te Apārangi/ ; },
mesh = {*Ecosystem ; *Food Chain ; Biodiversity ; Fresh Water ; Time Factors ; },
abstract = {A tenet of ecology is that temporal variability in ecological structure and processes tends to decrease with increasing spatial scales (from locales to regions) and levels of biological organization (from populations to communities). However, patterns in temporal variability across trophic levels and the mechanisms that produce them remain poorly understood. Here we analyzed the abundance time series of spatially structured communities (i.e., metacommunities) spanning basal resources to top predators from 355 freshwater sites across three continents. Specifically, we used a hierarchical partitioning method to disentangle the propagation of temporal variability in abundance across spatial scales and trophic levels. We then used structural equation modeling to determine if the strength and direction of relationships between temporal variability, synchrony, biodiversity, and environmental and spatial settings depended on trophic level and spatial scale. We found that temporal variability in abundance decreased from producers to tertiary consumers but did so mainly at the local scale. Species population synchrony within sites increased with trophic level, whereas synchrony among communities decreased. At the local scale, temporal variability in precipitation and species diversity were associated with population variability (linear partial coefficient, β = 0.23) and population synchrony (β = -0.39) similarly across trophic levels, respectively. At the regional scale, community synchrony was not related to climatic or spatial predictors, but the strength of relationships between metacommunity variability and community synchrony decreased systematically from top predators (β = 0.73) to secondary consumers (β = 0.54), to primary consumers (β = 0.30) to producers (β = 0). Our results suggest that mobile predators may often stabilize metacommunities by buffering variability that originates at the base of food webs. This finding illustrates that the trophic structure of metacommunities, which integrates variation in organismal body size and its correlates, should be considered when investigating ecological stability in natural systems. More broadly, our work advances the notion that temporal stability is an emergent property of ecosystems that may be threatened in complex ways by biodiversity loss and habitat fragmentation.},
}

*Ecosystem
*Food Chain
Biodiversity
Fresh Water
Time Factors

@article {pmid37991585,
year = {2024},
author = {Albuquerque-Lima, S and Lopes, AV and Machado, IC},
title = {Reproductive isolation between two sympatric bat-pollinated Bauhinia (Leguminosae).},
journal = {Journal of plant research},
volume = {137},
number = {1},
pages = {65-77},
pmid = {37991585},
issn = {1618-0860},
support = {PROEX-0487//Coordenação de Aperfeiçoamento de Pessoal de Nível Superior/ ; 001//Coordenação de Aperfeiçoamento de Pessoal de Nível Superior/ ; 88887.898666/2023-00//Coordenação de Aperfeiçoamento de Pessoal de Nível Superior/ ; 459485/2014-8//Conselho Nacional de Desenvolvimento Científico e Tecnológico/ ; , 437424/2018-9//Conselho Nacional de Desenvolvimento Científico e Tecnológico/ ; LTER-Catimbau 403770/2012-2//Conselho Nacional de Desenvolvimento Científico e Tecnológico/ ; 311021/2014-0//Conselho Nacional de Desenvolvimento Científico e Tecnológico/ ; 310508/2019-3//Conselho Nacional de Desenvolvimento Científico e Tecnológico/ ; 309505/2018-6//Conselho Nacional de Desenvolvimento Científico e Tecnológico/ ; 306286/2022-0//Conselho Nacional de Desenvolvimento Científico e Tecnológico/ ; },
mesh = {Animals ; *Chiroptera ; *Bauhinia ; *Fabaceae ; Reproductive Isolation ; Pollination ; Flowers/anatomy & histology ; },
abstract = {Several barriers contribute to reproductive isolation between plant species, which can be classified as pre- or post-pollination. Understanding the strength of these barriers could clarify the factors that maintain reproductive isolation and thus species integrity. In this study, we quantified reproductive isolation between two bat-pollinated co-occurring Bauhinia species (B. acuruana and B. pentandra) with similar flower morphology. Over the course of 18 months, we assessed reproductive isolation between these two Bauhinia species by quantifying the individual strengths and absolute contributions of five pre- and post- pollination barriers. Our data showed that both species are completely isolated in their reproduction by a combination of several barriers. Although they co-occur in a few populations, we found a high degree of geographic isolation between them. And although their flowering periods overlap, there is a significant difference in flowering peaks. Both species have the same pollinating bats, but the interspecific transfer of pollen between the plant species may be reduced due to the different length of the flower stamens, resulting in different pollen deposition on the bats' bodies. We have documented complete incompatibility between taxa and conclude that pre- and post-pollination barriers are important factors in preventing gene flow, even in contact zones between these two species of Bauhinia. We highlight that our work is the first study to use methods to estimate the strength of reproductive isolation barriers between bat-pollinated species.},
}

Animals
*Chiroptera
*Bauhinia
*Fabaceae
Reproductive Isolation
Pollination
Flowers/anatomy & histology

@article {pmid37967209,
year = {2023},
author = {Taniguchi, DAA and Menden-Deuer, S},
title = {Planktonic predator selectivity: Eating local with global implications.},
journal = {Proceedings of the National Academy of Sciences of the United States of America},
volume = {120},
number = {48},
pages = {e2317302120},
pmid = {37967209},
issn = {1091-6490},
support = {LTER-1655686//National Science Foundation (NSF)/ ; OCE-1736635//National Science Foundation (NSF)/ ; 80NSSC17K0716//National Aeronautics and Space Administration (NASA)/ ; },
mesh = {Animals ; *Plankton ; *Food Chain ; Predatory Behavior ; Oceans and Seas ; },
}

Animals
*Plankton
*Food Chain
Predatory Behavior
Oceans and Seas

@article {pmid37933324,
year = {2023},
author = {Matthews, SA and Blanco-Bercial, L},
title = {Divergent patterns of zooplankton connectivity in the epipelagic and mesopelagic zones of the eastern North Pacific.},
journal = {Ecology and evolution},
volume = {13},
number = {11},
pages = {e10664},
pmid = {37933324},
issn = {2045-7758},
abstract = {Due to historical under-sampling of the deep ocean, the distributional ranges of mesopelagic zooplankton are not well documented, leading to uncertainty about the mechanisms that shape midwater zooplankton community composition. Using a combination of DNA metabarcoding (18S-V4 and mtCOI) and trait-based analysis, we characterized zooplankton diversity and community composition in the upper 1000 m of the northeast Pacific Ocean. We tested whether the North Pacific Transition Zone is a biogeographic boundary region for mesopelagic zooplankton. We also tested whether zooplankton taxa occupying different vertical habitats and exhibiting different ecological traits differed in the ranges of temperature, Chl-a, and dissolved oxygen conditions inhabited. The depth of the maximum taxonomic richness deepened with increasing latitude in the North Pacific. Community similarity in the mesopelagic zone also increased in comparison with the epipelagic zone, and no evidence was found for a biogeographic boundary between previously delineated mesopelagic biogeochemical provinces. Epipelagic zooplankton exhibited broader temperature and Chl-a ranges than mesopelagic taxa. Within the epipelagic, taxa with broader temperature and Chl-a ranges also had broader distributional ranges. However, mesopelagic taxa were distributed across wider dissolved oxygen ranges, and within the mesopelagic, only oxygen ranges covaried with distributional ranges. Environmental and distributional ranges also varied among traits, both for epipelagic taxa and mesopelagic taxa. The strongest differences in both environmental and distributional ranges were observed for taxa with or without diel vertical migration behavior. Our results suggest that species traits can influence the differential effects of physical dispersal and environmental selection in shaping biogeographic distributions.},
}

@article {pmid37878914,
year = {2023},
author = {Bergallo, HG and Rosa, C and Ochoa, AC and Manzatto, AG and Guimaraes, AF and Banhos, A and Castilho, CV and Barros, CF and Norris, D and Drucker, DP and Rodrigues, DJ and Baccaro, FB and Lourenço, IH and Zuanon, J and Stegmann, LF and Anjos, MR and Silveira, M and Araújo, PSG and Bobrowiec, PED and Fadini, R and Neckel-Oliveira, S and Emilio, T and Santorelli Junior, S and Magnusson, WE},
title = {Long-term Ecological Research: Chasing fashions or being prepared for fashion changes?.},
journal = {Anais da Academia Brasileira de Ciencias},
volume = {95},
number = {3},
pages = {e20230051},
doi = {10.1590/0001-3765202320230051},
pmid = {37878914},
issn = {1678-2690},
mesh = {Humans ; *Ecosystem ; *Biodiversity ; Longitudinal Studies ; },
abstract = {Long-term-ecological-research (LTER) faces many challenges, including the difficulty of obtaining long-term funding, changes in research questions and sampling designs, keeping researchers collecting standardized data for many years, impediments to interactions with local people, and the difficulty of integrating the needs of local decision makers with "big science". These issues result in a lack of universally accepted guidelines as to how research should be done and integrated among LTER sites. Here we discuss how the RAPELD (standardized field infrastructure system), can help deal with these issues as a complementary technique in LTER studies, allowing comparisons across landscapes and ecosystems and reducing sampling costs. RAPELD uses local surveys to understand broad spatial and temporal patterns while enhancing decision-making and training of researchers, local indigenous groups and traditional communities. Sampling of ecological data can be carried out by different researchers through standardized protocols, resulting in spatial data that can be used to answer temporal questions, and allow new questions to be investigated. Results can also be integrated into existing biodiversity networks. Integrated systems are the most efficient way to save resources, maximize results, and accumulate information that can be used in the face of the unknown unknowns upon which our future depends.},
}

Humans
*Ecosystem
*Biodiversity
Longitudinal Studies